Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30123 | 5' | -46.9 | NC_006273.1 | + | 138101 | 0.73 | 0.987352 |
Target: 5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 1720 | 0.73 | 0.98567 |
Target: 5'- cGCGGCg---GUGGCGACUGGgccgACAGCg -3' miRNA: 3'- -UGCUGacaaCGCUGUUGAUCa---UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 234922 | 0.73 | 0.983821 |
Target: 5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3' miRNA: 3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148642 | 0.66 | 0.999978 |
Target: 5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3' miRNA: 3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 141597 | 0.75 | 0.968738 |
Target: 5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3' miRNA: 3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 1215 | 0.67 | 0.999947 |
Target: 5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3' miRNA: 3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 197059 | 0.7 | 0.998291 |
Target: 5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3' miRNA: 3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 67079 | 0.69 | 0.999219 |
Target: 5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3' miRNA: 3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 214981 | 0.69 | 0.999368 |
Target: 5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3' miRNA: 3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 116787 | 0.66 | 0.999992 |
Target: 5'- cCGGCgc-UGCGACGACguggAGgccGCGACg -3' miRNA: 3'- uGCUGacaACGCUGUUGa---UCa--UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 201129 | 0.66 | 0.999992 |
Target: 5'- cGCGACaUGU--CGACGACaGGUGCGGa -3' miRNA: 3'- -UGCUG-ACAacGCUGUUGaUCAUGUUg -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 148851 | 0.66 | 0.999994 |
Target: 5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3' miRNA: 3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 233524 | 0.68 | 0.999844 |
Target: 5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3' miRNA: 3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 132869 | 0.68 | 0.999744 |
Target: 5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3' miRNA: 3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 101606 | 0.68 | 0.999744 |
Target: 5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3' miRNA: 3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 56967 | 0.68 | 0.999744 |
Target: 5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3' miRNA: 3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 115385 | 0.68 | 0.999719 |
Target: 5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3' miRNA: 3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 87715 | 0.68 | 0.999908 |
Target: 5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3' miRNA: 3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 68344 | 0.68 | 0.999908 |
Target: 5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3' miRNA: 3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5' |
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30123 | 5' | -46.9 | NC_006273.1 | + | 229448 | 0.69 | 0.999491 |
Target: 5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3' miRNA: 3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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