miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30123 5' -46.9 NC_006273.1 + 138101 0.73 0.987352
Target:  5'- uACGAcCUGUuuaccucaUGCGGCAAUcGGUGCGAUa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGaUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 1720 0.73 0.98567
Target:  5'- cGCGGCg---GUGGCGACUGGgccgACAGCg -3'
miRNA:   3'- -UGCUGacaaCGCUGUUGAUCa---UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 234922 0.73 0.983821
Target:  5'- gGCGACUaGUUGCGuguGCuGCggugGGUACGGCg -3'
miRNA:   3'- -UGCUGA-CAACGC---UGuUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 148642 0.66 0.999978
Target:  5'- gACGGCguugGacGCGGCGGCUgaggugcucucguGGUGCGGCc -3'
miRNA:   3'- -UGCUGa---CaaCGCUGUUGA-------------UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 141597 0.75 0.968738
Target:  5'- aACGACagUGUcggUGUGGUAGCUAGUGCAGCc -3'
miRNA:   3'- -UGCUG--ACA---ACGCUGUUGAUCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 1215 0.67 0.999947
Target:  5'- gGCGAgCUGUUGCGugGcggggacgggggACUcuUGCGGCg -3'
miRNA:   3'- -UGCU-GACAACGCugU------------UGAucAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 197059 0.7 0.998291
Target:  5'- cGCGACgGcgGCGGCAGCg---GCAGCa -3'
miRNA:   3'- -UGCUGaCaaCGCUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 67079 0.69 0.999219
Target:  5'- uGCGACUGgcGCG-CGACgAGUcgccGCGACc -3'
miRNA:   3'- -UGCUGACaaCGCuGUUGaUCA----UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 214981 0.69 0.999368
Target:  5'- gACGaACUGggGCGACGccgcuGCUGugGCAGCg -3'
miRNA:   3'- -UGC-UGACaaCGCUGU-----UGAUcaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 116787 0.66 0.999992
Target:  5'- cCGGCgc-UGCGACGACguggAGgccGCGACg -3'
miRNA:   3'- uGCUGacaACGCUGUUGa---UCa--UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 201129 0.66 0.999992
Target:  5'- cGCGACaUGU--CGACGACaGGUGCGGa -3'
miRNA:   3'- -UGCUG-ACAacGCUGUUGaUCAUGUUg -5'
30123 5' -46.9 NC_006273.1 + 148851 0.66 0.999994
Target:  5'- cUGGCUGUUGCcgccgcugccgcguGACGACg---GCGACg -3'
miRNA:   3'- uGCUGACAACG--------------CUGUUGaucaUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 233524 0.68 0.999844
Target:  5'- cACGGCcGUaGCaGCGACgcggGGUGCGGCg -3'
miRNA:   3'- -UGCUGaCAaCGcUGUUGa---UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 132869 0.68 0.999744
Target:  5'- -gGAC-GUUGUGAUcACUacGGUGCAGCg -3'
miRNA:   3'- ugCUGaCAACGCUGuUGA--UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 101606 0.68 0.999744
Target:  5'- aACGACggagcGUcGUGACGGCcgcgugAGUGCAGCu -3'
miRNA:   3'- -UGCUGa----CAaCGCUGUUGa-----UCAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 56967 0.68 0.999744
Target:  5'- -aGACcGUUGCGGCuGGCcacGUACAACa -3'
miRNA:   3'- ugCUGaCAACGCUG-UUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 115385 0.68 0.999719
Target:  5'- cGCGACgGUgacggcauuaugaGCGGCGGCgcuGUACGGCa -3'
miRNA:   3'- -UGCUGaCAa------------CGCUGUUGau-CAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 87715 0.68 0.999908
Target:  5'- uGCGACUGUUGCuGCugUUGuUGCGAUg -3'
miRNA:   3'- -UGCUGACAACGcUGuuGAUcAUGUUG- -5'
30123 5' -46.9 NC_006273.1 + 68344 0.68 0.999908
Target:  5'- -aGACgcaGUUGCGACAACgcgacgaGCAGCu -3'
miRNA:   3'- ugCUGa--CAACGCUGUUGauca---UGUUG- -5'
30123 5' -46.9 NC_006273.1 + 229448 0.69 0.999491
Target:  5'- cACGGcCUGUggugcgauUGCGGCGACUGGcgAgAGCa -3'
miRNA:   3'- -UGCU-GACA--------ACGCUGUUGAUCa-UgUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.