miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30130 3' -50.2 NC_006273.1 + 132242 0.66 0.999191
Target:  5'- cUCGGAcga-GGCCCUGAccgagACCGUguGGCu -3'
miRNA:   3'- aAGUCUaagaCUGGGACU-----UGGCA--UCG- -5'
30130 3' -50.2 NC_006273.1 + 150913 0.66 0.999191
Target:  5'- -gCAGGUUgUcGGCCUUGAcgauGCCGcAGCg -3'
miRNA:   3'- aaGUCUAAgA-CUGGGACU----UGGCaUCG- -5'
30130 3' -50.2 NC_006273.1 + 145930 0.66 0.999013
Target:  5'- --uGGA-UCUGAauCCCUacGCCGUGGCc -3'
miRNA:   3'- aagUCUaAGACU--GGGAcuUGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 95159 0.66 0.998801
Target:  5'- -gCGGcuugCUGGCCCUGGG-CGUGGUc -3'
miRNA:   3'- aaGUCuaa-GACUGGGACUUgGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 66415 0.66 0.998801
Target:  5'- -gCAGAUg--GA-CCUGGACCGUcugAGCa -3'
miRNA:   3'- aaGUCUAagaCUgGGACUUGGCA---UCG- -5'
30130 3' -50.2 NC_006273.1 + 214565 0.67 0.997531
Target:  5'- gUCAGGUgUUGGCCaacagauagaUGAaaagcACCGUGGCg -3'
miRNA:   3'- aAGUCUAaGACUGGg---------ACU-----UGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 205877 0.67 0.99703
Target:  5'- uUUCGGAaugcgcgUUCUcGGCCUggGAACCGUcAGCc -3'
miRNA:   3'- -AAGUCU-------AAGA-CUGGGa-CUUGGCA-UCG- -5'
30130 3' -50.2 NC_006273.1 + 214807 0.67 0.99656
Target:  5'- -cCGGGUUCUGuCCCgGAACCcacguGCg -3'
miRNA:   3'- aaGUCUAAGACuGGGaCUUGGcau--CG- -5'
30130 3' -50.2 NC_006273.1 + 233231 0.67 0.995967
Target:  5'- -gUAGuUUCgggGAUUgUGAACCGUGGCu -3'
miRNA:   3'- aaGUCuAAGa--CUGGgACUUGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 234332 0.68 0.995293
Target:  5'- --gGGGUUCU-ACCCggugGAcGCCGUGGCc -3'
miRNA:   3'- aagUCUAAGAcUGGGa---CU-UGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 39439 0.68 0.995293
Target:  5'- --gGGGUUCU-ACCCggugGAcGCCGUGGCc -3'
miRNA:   3'- aagUCUAAGAcUGGGa---CU-UGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 7716 0.68 0.995293
Target:  5'- aUUCGGGgcggUaaGAacgguacauUCCUGAACCGUAGCc -3'
miRNA:   3'- -AAGUCUa---AgaCU---------GGGACUUGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 214913 0.7 0.98308
Target:  5'- -gCGGGUUCUGAUCUggcuaGAgacuugcuguguccaACCGUGGCa -3'
miRNA:   3'- aaGUCUAAGACUGGGa----CU---------------UGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 233286 0.71 0.963324
Target:  5'- gUguGA-UCUGGCC--GAGCCGUAGCa -3'
miRNA:   3'- aAguCUaAGACUGGgaCUUGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 153241 0.75 0.846257
Target:  5'- -cCAGAUgcuUCUGGCCCUGGcCCGUcuggacgcagAGCa -3'
miRNA:   3'- aaGUCUA---AGACUGGGACUuGGCA----------UCG- -5'
30130 3' -50.2 NC_006273.1 + 166398 0.78 0.695278
Target:  5'- gUCAGAUUgCUGACCgaGGaaACCGUGGUg -3'
miRNA:   3'- aAGUCUAA-GACUGGgaCU--UGGCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 14326 0.79 0.678748
Target:  5'- -gCGGGUUCUGGCCCUGAcggcgcugcaguuguGCCGccggAGCu -3'
miRNA:   3'- aaGUCUAAGACUGGGACU---------------UGGCa---UCG- -5'
30130 3' -50.2 NC_006273.1 + 101850 0.8 0.622425
Target:  5'- -cCAGAggCUGGCCCaGAGCgCGUAGCu -3'
miRNA:   3'- aaGUCUaaGACUGGGaCUUG-GCAUCG- -5'
30130 3' -50.2 NC_006273.1 + 120695 1.09 0.014415
Target:  5'- cUUCAGAUUCUGACCCUGAACCGUAGCc -3'
miRNA:   3'- -AAGUCUAAGACUGGGACUUGGCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.