miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30131 3' -58.7 NC_006273.1 + 103223 0.66 0.895815
Target:  5'- uCUGguGGAucacuUCGCG-CgUGUGCGGCGu -3'
miRNA:   3'- -GACguCCUc----AGCGCaGaGCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 199370 0.66 0.895815
Target:  5'- -cGCAGGGcuaGCGUCUCGaagauCGGCAu -3'
miRNA:   3'- gaCGUCCUcagCGCAGAGCac---GCCGU- -5'
30131 3' -58.7 NC_006273.1 + 164900 0.66 0.889439
Target:  5'- -gGCAGGuugacgCGCGUCugcuucagcUCGgGCGGCAg -3'
miRNA:   3'- gaCGUCCuca---GCGCAG---------AGCaCGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 61215 0.66 0.882856
Target:  5'- -cGCAGccca-GCGUCUCGagGCGGCGg -3'
miRNA:   3'- gaCGUCcucagCGCAGAGCa-CGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 109262 0.66 0.882856
Target:  5'- gUGCAGGAccucuuUCGCGUCUucccuaugaaCGUGUaccGGCAc -3'
miRNA:   3'- gACGUCCUc-----AGCGCAGA----------GCACG---CCGU- -5'
30131 3' -58.7 NC_006273.1 + 141272 0.66 0.87607
Target:  5'- -gGCAcGGGGcUCGCG-CUCccuagGUGCGGCc -3'
miRNA:   3'- gaCGU-CCUC-AGCGCaGAG-----CACGCCGu -5'
30131 3' -58.7 NC_006273.1 + 144322 0.66 0.869084
Target:  5'- -cGCGcGGAcaGUCGCGcaaCUCgGUGUGGCAu -3'
miRNA:   3'- gaCGU-CCU--CAGCGCa--GAG-CACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 191928 0.67 0.831341
Target:  5'- cCUGgAGGAGUCGCGg--CaUGaCGGCGc -3'
miRNA:   3'- -GACgUCCUCAGCGCagaGcAC-GCCGU- -5'
30131 3' -58.7 NC_006273.1 + 22334 0.67 0.831341
Target:  5'- gCUGCucauGGAGgucuaucaCGgG-CUCGUGUGGCAg -3'
miRNA:   3'- -GACGu---CCUCa-------GCgCaGAGCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 129911 0.67 0.831341
Target:  5'- -cGUAGGca--GCGUCUCcUGCGGCGc -3'
miRNA:   3'- gaCGUCCucagCGCAGAGcACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 185439 0.67 0.82327
Target:  5'- -cGCAGGAacucUCGCGUCgcCG-GCGGUAc -3'
miRNA:   3'- gaCGUCCUc---AGCGCAGa-GCaCGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 68365 0.68 0.789467
Target:  5'- gCUGCAaauca-GCGcCUCGUGCGGCAa -3'
miRNA:   3'- -GACGUccucagCGCaGAGCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 102302 0.68 0.771758
Target:  5'- gUGaCAGGGGcaaCGCGggcaggUCGUGCGGCGg -3'
miRNA:   3'- gAC-GUCCUCa--GCGCag----AGCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 81708 0.68 0.771758
Target:  5'- uCUGCAGGcgcuggauGGUgGUcucCUCGUGCGGCu -3'
miRNA:   3'- -GACGUCC--------UCAgCGca-GAGCACGCCGu -5'
30131 3' -58.7 NC_006273.1 + 163349 0.69 0.735036
Target:  5'- uCUGCGGcAGUCaGCGgguaGUGCGGCAg -3'
miRNA:   3'- -GACGUCcUCAG-CGCagagCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 163063 0.69 0.725631
Target:  5'- gUGCAGGAGUCcgagGCGgcggCGacgGCGGCGg -3'
miRNA:   3'- gACGUCCUCAG----CGCaga-GCa--CGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 13214 0.7 0.658176
Target:  5'- gUGCGGcGuuacaGCGUCUgGUGCGGCAu -3'
miRNA:   3'- gACGUC-Cucag-CGCAGAgCACGCCGU- -5'
30131 3' -58.7 NC_006273.1 + 166159 0.72 0.580043
Target:  5'- -aGCGcGGGGUCG-GUCUCGUGUguuGGCGg -3'
miRNA:   3'- gaCGU-CCUCAGCgCAGAGCACG---CCGU- -5'
30131 3' -58.7 NC_006273.1 + 122090 1.08 0.002991
Target:  5'- uCUGCAGGAGUCGCGUCUCGUGCGGCAg -3'
miRNA:   3'- -GACGUCCUCAGCGCAGAGCACGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.