miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30132 3' -61 NC_006273.1 + 173087 0.66 0.840003
Target:  5'- aGCACCgugUCCAGUUCggUGUCggUGUCGCg -3'
miRNA:   3'- gCGUGG---AGGUCAGGgaGCAG--GCGGCG- -5'
30132 3' -61 NC_006273.1 + 111931 0.66 0.840003
Target:  5'- gGCGCC-CUGGUggacuuugauuUUCUgCGUCUGCCGCg -3'
miRNA:   3'- gCGUGGaGGUCA-----------GGGA-GCAGGCGGCG- -5'
30132 3' -61 NC_006273.1 + 132963 0.66 0.840003
Target:  5'- uCGCACgaggagCUGGUUCUUUGUCCGCC-Cg -3'
miRNA:   3'- -GCGUGga----GGUCAGGGAGCAGGCGGcG- -5'
30132 3' -61 NC_006273.1 + 44435 0.66 0.839243
Target:  5'- gCGCAugcggcaguguuuCCgcggCCAGUUgCUgGaCCGCCGCg -3'
miRNA:   3'- -GCGU-------------GGa---GGUCAGgGAgCaGGCGGCG- -5'
30132 3' -61 NC_006273.1 + 93069 0.66 0.837718
Target:  5'- gCGCAgCUCCAcGUCguuuucuucgagcaCCgCGUCCacGCCGCc -3'
miRNA:   3'- -GCGUgGAGGU-CAG--------------GGaGCAGG--CGGCG- -5'
30132 3' -61 NC_006273.1 + 123126 0.66 0.831555
Target:  5'- gCGCACCcggUCCAugagcacGUCCUcgCGccagcccCCGCCGCg -3'
miRNA:   3'- -GCGUGG---AGGU-------CAGGGa-GCa------GGCGGCG- -5'
30132 3' -61 NC_006273.1 + 166375 0.66 0.824501
Target:  5'- cCGCAUCgcuuggCCAGUUCCgcaaaacgaGUCCGCagauCGCg -3'
miRNA:   3'- -GCGUGGa-----GGUCAGGGag-------CAGGCG----GCG- -5'
30132 3' -61 NC_006273.1 + 36410 0.66 0.824501
Target:  5'- aGCGCCgcguacaCGGUgCC-CGUgUCGCCGCa -3'
miRNA:   3'- gCGUGGag-----GUCAgGGaGCA-GGCGGCG- -5'
30132 3' -61 NC_006273.1 + 148124 0.66 0.824501
Target:  5'- uGCACCgacUCCAuGUCUCUgG-CCGgCGCc -3'
miRNA:   3'- gCGUGG---AGGU-CAGGGAgCaGGCgGCG- -5'
30132 3' -61 NC_006273.1 + 83941 0.66 0.822917
Target:  5'- gGCcuACCUgCAGcucUCCUUCGgcgagaucguagCCGCCGCc -3'
miRNA:   3'- gCG--UGGAgGUC---AGGGAGCa-----------GGCGGCG- -5'
30132 3' -61 NC_006273.1 + 171598 0.66 0.816519
Target:  5'- uGUACCUCCAcGUacaC-CGUCaCGCCGUc -3'
miRNA:   3'- gCGUGGAGGU-CAgg-GaGCAG-GCGGCG- -5'
30132 3' -61 NC_006273.1 + 122988 0.66 0.816519
Target:  5'- cCGCGgCgaCGGUCCUUCGUCgaGCuCGCa -3'
miRNA:   3'- -GCGUgGagGUCAGGGAGCAGg-CG-GCG- -5'
30132 3' -61 NC_006273.1 + 90864 0.66 0.816519
Target:  5'- gCGCGCaUCCAGcgagaCCUCGUCgGCUucgGCg -3'
miRNA:   3'- -GCGUGgAGGUCag---GGAGCAGgCGG---CG- -5'
30132 3' -61 NC_006273.1 + 154252 0.66 0.816519
Target:  5'- aGCuCCaUCCGcaacCCCUCGUaCGCCGCc -3'
miRNA:   3'- gCGuGG-AGGUca--GGGAGCAgGCGGCG- -5'
30132 3' -61 NC_006273.1 + 78081 0.66 0.808393
Target:  5'- -uCACCguccCCAGUCaCCacCG-CCGCCGCu -3'
miRNA:   3'- gcGUGGa---GGUCAG-GGa-GCaGGCGGCG- -5'
30132 3' -61 NC_006273.1 + 174060 0.66 0.808393
Target:  5'- uCGCGCCUCCAacGUCUCggccagcacgCG-CUGCCuGCu -3'
miRNA:   3'- -GCGUGGAGGU--CAGGGa---------GCaGGCGG-CG- -5'
30132 3' -61 NC_006273.1 + 49969 0.66 0.808393
Target:  5'- uGCGCggugCUGGUCCaccaCGUCgGCCGCg -3'
miRNA:   3'- gCGUGga--GGUCAGGga--GCAGgCGGCG- -5'
30132 3' -61 NC_006273.1 + 229040 0.66 0.80345
Target:  5'- gCGUAuuCCUCgGGUUCCUCGgccucuuccuccgguUUCGUCGCg -3'
miRNA:   3'- -GCGU--GGAGgUCAGGGAGC---------------AGGCGGCG- -5'
30132 3' -61 NC_006273.1 + 195647 0.66 0.800128
Target:  5'- aGCGCaagUCCAacUCCaC-CGUCUGCCGCg -3'
miRNA:   3'- gCGUGg--AGGUc-AGG-GaGCAGGCGGCG- -5'
30132 3' -61 NC_006273.1 + 136694 0.66 0.800128
Target:  5'- aCG-ACCggCCGGUCgC-CG-CCGCCGCg -3'
miRNA:   3'- -GCgUGGa-GGUCAGgGaGCaGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.