miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30132 5' -52.8 NC_006273.1 + 193259 0.66 0.992798
Target:  5'- aGGUGGUGCAgcGUGAGaaacaGCAGcugaaGGCu -3'
miRNA:   3'- aCCGCCAUGUuuCAUUC-----CGUCa----CCGc -5'
30132 5' -52.8 NC_006273.1 + 94815 0.66 0.992798
Target:  5'- cGGCGGUcggccgacgACGAcGGUAgguGGGCcgGGUGGaCGg -3'
miRNA:   3'- aCCGCCA---------UGUU-UCAU---UCCG--UCACC-GC- -5'
30132 5' -52.8 NC_006273.1 + 108073 0.66 0.992798
Target:  5'- -uGCGcGUAUcguaAAAGUAGGGCGGUuaGGCc -3'
miRNA:   3'- acCGC-CAUG----UUUCAUUCCGUCA--CCGc -5'
30132 5' -52.8 NC_006273.1 + 197015 0.66 0.991752
Target:  5'- cGGCGGUaacaGCAGcuccGUGAagcugacgagcGGCAGcGGCGa -3'
miRNA:   3'- aCCGCCA----UGUUu---CAUU-----------CCGUCaCCGC- -5'
30132 5' -52.8 NC_006273.1 + 169982 0.66 0.991752
Target:  5'- cGGCaGGUgcggaugucucGCAGGGU-GGGUAGaugGGCGa -3'
miRNA:   3'- aCCG-CCA-----------UGUUUCAuUCCGUCa--CCGC- -5'
30132 5' -52.8 NC_006273.1 + 157351 0.66 0.99059
Target:  5'- cUGGUGGUG-AGAGUAGuGGUGG-GGCu -3'
miRNA:   3'- -ACCGCCAUgUUUCAUU-CCGUCaCCGc -5'
30132 5' -52.8 NC_006273.1 + 99844 0.66 0.99059
Target:  5'- gGGCGGga-GGAGc--GGCGGcGGCGa -3'
miRNA:   3'- aCCGCCaugUUUCauuCCGUCaCCGC- -5'
30132 5' -52.8 NC_006273.1 + 178534 0.66 0.99059
Target:  5'- gUGGCGGcgGCGGuGGUAGcGGCAGccucucuucgcUGGCu -3'
miRNA:   3'- -ACCGCCa-UGUU-UCAUU-CCGUC-----------ACCGc -5'
30132 5' -52.8 NC_006273.1 + 17283 0.66 0.989303
Target:  5'- uUGGCGGacgaugaggaGCAGGGaGAGGaugaugacgaCAGUGGCGc -3'
miRNA:   3'- -ACCGCCa---------UGUUUCaUUCC----------GUCACCGC- -5'
30132 5' -52.8 NC_006273.1 + 147975 0.66 0.989303
Target:  5'- aGGCGGa--GGAGccggcggcGGCGGUGGUGg -3'
miRNA:   3'- aCCGCCaugUUUCauu-----CCGUCACCGC- -5'
30132 5' -52.8 NC_006273.1 + 149457 0.66 0.989303
Target:  5'- cGGUGGUaguccgcuccACGGGGUGguGGGUGGUuucgcGGCGg -3'
miRNA:   3'- aCCGCCA----------UGUUUCAU--UCCGUCA-----CCGC- -5'
30132 5' -52.8 NC_006273.1 + 137709 0.67 0.984609
Target:  5'- aGGUGGUGCuca-UGAGGU-GUGGUGu -3'
miRNA:   3'- aCCGCCAUGuuucAUUCCGuCACCGC- -5'
30132 5' -52.8 NC_006273.1 + 235026 0.67 0.984609
Target:  5'- gGGCGuGUGCcGGGUGugucGGCGG-GGUGu -3'
miRNA:   3'- aCCGC-CAUGuUUCAUu---CCGUCaCCGC- -5'
30132 5' -52.8 NC_006273.1 + 170090 0.67 0.984609
Target:  5'- cGGaGGUAaggAAGGUGcGGCGGUGGUc -3'
miRNA:   3'- aCCgCCAUg--UUUCAUuCCGUCACCGc -5'
30132 5' -52.8 NC_006273.1 + 195 0.67 0.984609
Target:  5'- gGGCGuGUGCcGGGUGugucGGCGG-GGUGu -3'
miRNA:   3'- aCCGC-CAUGuUUCAUu---CCGUCaCCGC- -5'
30132 5' -52.8 NC_006273.1 + 195088 0.67 0.984609
Target:  5'- gGGCGuGUGCcGGGUGugucGGCGG-GGUGu -3'
miRNA:   3'- aCCGC-CAUGuUUCAUu---CCGUCaCCGC- -5'
30132 5' -52.8 NC_006273.1 + 158662 0.67 0.983507
Target:  5'- uUGGCGGUuacgaGCAAgagucaucacggaccAgccGUGAGGCAG-GGCa -3'
miRNA:   3'- -ACCGCCA-----UGUU---------------U---CAUUCCGUCaCCGc -5'
30132 5' -52.8 NC_006273.1 + 31449 0.67 0.982739
Target:  5'- cUGGCGaaGCcgccaUGAGGCGGUGGCu -3'
miRNA:   3'- -ACCGCcaUGuuuc-AUUCCGUCACCGc -5'
30132 5' -52.8 NC_006273.1 + 36379 0.67 0.982739
Target:  5'- gGGUGGUGCucGAGcGAGaGCAcUGGCa -3'
miRNA:   3'- aCCGCCAUGu-UUCaUUC-CGUcACCGc -5'
30132 5' -52.8 NC_006273.1 + 31699 0.67 0.981538
Target:  5'- gUGGCGuGUACAGGGUacGuucuaucccgagaaaGGGaUAGUGGCu -3'
miRNA:   3'- -ACCGC-CAUGUUUCA--U---------------UCC-GUCACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.