miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30135 3' -51.4 NC_006273.1 + 102080 0.66 0.996874
Target:  5'- --cGAGCAGCGGCGgccacacgcgGGUGAcgacgagccgCUGCAa -3'
miRNA:   3'- acuCUCGUCGCUGUa---------CUACUa---------GACGU- -5'
30135 3' -51.4 NC_006273.1 + 84476 0.66 0.996874
Target:  5'- uUGAGGGUAGUGuuGUaGAUGGUCUcGUu -3'
miRNA:   3'- -ACUCUCGUCGCugUA-CUACUAGA-CGu -5'
30135 3' -51.4 NC_006273.1 + 143242 0.66 0.996327
Target:  5'- gGAGcGCAGCGAaaaucgGUGGUGAUagcgGCGa -3'
miRNA:   3'- aCUCuCGUCGCUg-----UACUACUAga--CGU- -5'
30135 3' -51.4 NC_006273.1 + 43056 0.66 0.995705
Target:  5'- gGGGAGCgacaagacAGgGACGUGGcgGAcUCUGCGa -3'
miRNA:   3'- aCUCUCG--------UCgCUGUACUa-CU-AGACGU- -5'
30135 3' -51.4 NC_006273.1 + 110867 0.66 0.995705
Target:  5'- --uGGGCGGUGGCAcagUGGUGggCUGUu -3'
miRNA:   3'- acuCUCGUCGCUGU---ACUACuaGACGu -5'
30135 3' -51.4 NC_006273.1 + 137269 0.66 0.995432
Target:  5'- cGAGAGCGGUccgcccgccgaacgGACuugguacgcugacGUGGUGcgCUGCGu -3'
miRNA:   3'- aCUCUCGUCG--------------CUG-------------UACUACuaGACGU- -5'
30135 3' -51.4 NC_006273.1 + 185725 0.66 0.994998
Target:  5'- cGGGcagcGCGGCGGCAUcuacugcuacGAUGAcCUGCGc -3'
miRNA:   3'- aCUCu---CGUCGCUGUA----------CUACUaGACGU- -5'
30135 3' -51.4 NC_006273.1 + 149373 0.66 0.994998
Target:  5'- aGAGAGCGcgccCGGCGUGcuguUGGUCUGgGg -3'
miRNA:   3'- aCUCUCGUc---GCUGUACu---ACUAGACgU- -5'
30135 3' -51.4 NC_006273.1 + 80082 0.66 0.9942
Target:  5'- ---cAGCAGCGAgGUGuagauacgGAUCUGCu -3'
miRNA:   3'- acucUCGUCGCUgUACua------CUAGACGu -5'
30135 3' -51.4 NC_006273.1 + 234491 0.66 0.9942
Target:  5'- gGGGGcGCGGCGACAUGccguUGcgCUGg- -3'
miRNA:   3'- aCUCU-CGUCGCUGUACu---ACuaGACgu -5'
30135 3' -51.4 NC_006273.1 + 39598 0.66 0.9942
Target:  5'- gGGGGcGCGGCGACAUGccguUGcgCUGg- -3'
miRNA:   3'- aCUCU-CGUCGCUGUACu---ACuaGACgu -5'
30135 3' -51.4 NC_006273.1 + 197353 0.67 0.992298
Target:  5'- gUGGGAGCGGCcGCGcUGGgacGcgCUGCAc -3'
miRNA:   3'- -ACUCUCGUCGcUGU-ACUa--CuaGACGU- -5'
30135 3' -51.4 NC_006273.1 + 179770 0.67 0.992298
Target:  5'- cGAGAccgGCGGCGACGUG--GGUC-GCGa -3'
miRNA:   3'- aCUCU---CGUCGCUGUACuaCUAGaCGU- -5'
30135 3' -51.4 NC_006273.1 + 2460 0.67 0.992298
Target:  5'- gUGGGAGCGGCcGCGcUGGgacGcgCUGCAc -3'
miRNA:   3'- -ACUCUCGUCGcUGU-ACUa--CuaGACGU- -5'
30135 3' -51.4 NC_006273.1 + 185618 0.67 0.989929
Target:  5'- gUGGGAGCGGCccGGCGgaagcucGAUGAgcaguugCUGCGa -3'
miRNA:   3'- -ACUCUCGUCG--CUGUa------CUACUa------GACGU- -5'
30135 3' -51.4 NC_006273.1 + 80844 0.67 0.989929
Target:  5'- cGGGGcGCAGCGcCuccuUGGUGAUCUcGCu -3'
miRNA:   3'- aCUCU-CGUCGCuGu---ACUACUAGA-CGu -5'
30135 3' -51.4 NC_006273.1 + 72598 0.68 0.985352
Target:  5'- ---cGGCAGCGACAUGcgGccgCUGCc -3'
miRNA:   3'- acucUCGUCGCUGUACuaCua-GACGu -5'
30135 3' -51.4 NC_006273.1 + 157292 0.68 0.983517
Target:  5'- uUGAGAaacaGCGGCGGCGgUGGUGA-CUGgGg -3'
miRNA:   3'- -ACUCU----CGUCGCUGU-ACUACUaGACgU- -5'
30135 3' -51.4 NC_006273.1 + 80383 0.68 0.981514
Target:  5'- cGGGAGCGGCGGcCGUGgcGG-CgGCAg -3'
miRNA:   3'- aCUCUCGUCGCU-GUACuaCUaGaCGU- -5'
30135 3' -51.4 NC_006273.1 + 175751 0.68 0.979334
Target:  5'- cGAGAGCccgGGCGGCGUGuu--UUUGCGc -3'
miRNA:   3'- aCUCUCG---UCGCUGUACuacuAGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.