miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30135 5' -51.4 NC_006273.1 + 131830 0.66 0.997838
Target:  5'- gCGUGCUUGCCugcUCAaGCUGCacGGUCg -3'
miRNA:   3'- -GCACGAAUGGu--AGUgCGGUGa-CUAGa -5'
30135 5' -51.4 NC_006273.1 + 137442 0.66 0.997724
Target:  5'- gCGUGCUcuaCGUCACGCCagacuuggacuuuuACUGGgugCUg -3'
miRNA:   3'- -GCACGAaugGUAGUGCGG--------------UGACUa--GA- -5'
30135 5' -51.4 NC_006273.1 + 163157 0.66 0.997395
Target:  5'- aGUGCgagcGCCAUCuggaugcGCGCuCGCUGGUg- -3'
miRNA:   3'- gCACGaa--UGGUAG-------UGCG-GUGACUAga -5'
30135 5' -51.4 NC_006273.1 + 21150 0.66 0.996979
Target:  5'- -aUGCau-CCGUCACGCCGuCUGucUCUa -3'
miRNA:   3'- gcACGaauGGUAGUGCGGU-GACu-AGA- -5'
30135 5' -51.4 NC_006273.1 + 192675 0.66 0.996979
Target:  5'- cCG-GCacGCCAaCACGgCGCUGGUCa -3'
miRNA:   3'- -GCaCGaaUGGUaGUGCgGUGACUAGa -5'
30135 5' -51.4 NC_006273.1 + 171301 0.66 0.996979
Target:  5'- gGUGCUcGCCc---CGCCGCUGcUCUg -3'
miRNA:   3'- gCACGAaUGGuaguGCGGUGACuAGA- -5'
30135 5' -51.4 NC_006273.1 + 39271 0.66 0.996453
Target:  5'- cCGUGCUguugGCCAgaaacgccgCGCGCCACa----- -3'
miRNA:   3'- -GCACGAa---UGGUa--------GUGCGGUGacuaga -5'
30135 5' -51.4 NC_006273.1 + 234164 0.66 0.996453
Target:  5'- cCGUGCUguugGCCAgaaacgccgCGCGCCACa----- -3'
miRNA:   3'- -GCACGAa---UGGUa--------GUGCGGUGacuaga -5'
30135 5' -51.4 NC_006273.1 + 175554 0.67 0.995177
Target:  5'- gCGUGaaaGCCG-CACGCCACUGuGUUa -3'
miRNA:   3'- -GCACgaaUGGUaGUGCGGUGAC-UAGa -5'
30135 5' -51.4 NC_006273.1 + 102481 0.67 0.994411
Target:  5'- aCGUGUUcACCAgggcgCGCGCCGCcGAg-- -3'
miRNA:   3'- -GCACGAaUGGUa----GUGCGGUGaCUaga -5'
30135 5' -51.4 NC_006273.1 + 171429 0.67 0.993549
Target:  5'- uCG-GCUUACUuccucuGUguCGCUGCUGAUCUg -3'
miRNA:   3'- -GCaCGAAUGG------UAguGCGGUGACUAGA- -5'
30135 5' -51.4 NC_006273.1 + 135617 0.67 0.993549
Target:  5'- --cGCcgGCCGUUACGCCGacgUGAUCc -3'
miRNA:   3'- gcaCGaaUGGUAGUGCGGUg--ACUAGa -5'
30135 5' -51.4 NC_006273.1 + 35570 0.67 0.993549
Target:  5'- uGUGCUUaaACCA-CGCGCC-CUcuacGAUCUc -3'
miRNA:   3'- gCACGAA--UGGUaGUGCGGuGA----CUAGA- -5'
30135 5' -51.4 NC_006273.1 + 160380 0.67 0.993457
Target:  5'- aCGUGggUACUcggauucauggcgAUCgGCGCCGCUGAUUg -3'
miRNA:   3'- -GCACgaAUGG-------------UAG-UGCGGUGACUAGa -5'
30135 5' -51.4 NC_006273.1 + 99793 0.67 0.991508
Target:  5'- gCGUGCguaugagguaGCUGUaCACGCCGCUGAg-- -3'
miRNA:   3'- -GCACGaa--------UGGUA-GUGCGGUGACUaga -5'
30135 5' -51.4 NC_006273.1 + 155238 0.67 0.991508
Target:  5'- aCGagGCcgggGCCAUCGCGCgGCUGG-CUa -3'
miRNA:   3'- -GCa-CGaa--UGGUAGUGCGgUGACUaGA- -5'
30135 5' -51.4 NC_006273.1 + 124012 0.68 0.988848
Target:  5'- gGUGUaacGCCAaccaccaccuggaUCACGCCGCUGAa-- -3'
miRNA:   3'- gCACGaa-UGGU-------------AGUGCGGUGACUaga -5'
30135 5' -51.4 NC_006273.1 + 129244 0.68 0.98416
Target:  5'- gCGUGCgccGCCGcggcCAaGCCGCUGGUCa -3'
miRNA:   3'- -GCACGaa-UGGUa---GUgCGGUGACUAGa -5'
30135 5' -51.4 NC_006273.1 + 145451 0.69 0.980145
Target:  5'- -cUGCUcAUCGUCACGCCcgUGGUCUu -3'
miRNA:   3'- gcACGAaUGGUAGUGCGGugACUAGA- -5'
30135 5' -51.4 NC_006273.1 + 114208 0.69 0.972766
Target:  5'- -aUGUcgGCCgAUCGCGCCGCcucgGAUCUa -3'
miRNA:   3'- gcACGaaUGG-UAGUGCGGUGa---CUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.