miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30136 3' -54.7 NC_006273.1 + 40949 0.65 0.987094
Target:  5'- aCGGGGGUUG-CGcCGGggacgggggguguGCGGGGACGg -3'
miRNA:   3'- gGUUCUCGAUaGCuGCC-------------CGCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 1011 0.65 0.987094
Target:  5'- aCGGGGGUUG-CGcCGGggacgggggguguGCGGGGACGg -3'
miRNA:   3'- gGUUCUCGAUaGCuGCC-------------CGCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 21515 0.66 0.985679
Target:  5'- aCGccAGCUGUuacaucgcCGGCGGGCgcuggcguuucGAGGACGg -3'
miRNA:   3'- gGUucUCGAUA--------GCUGCCCG-----------CUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 160575 0.66 0.985679
Target:  5'- aCGAGcGGUgggcUCGAgGGGgGAGGugGu -3'
miRNA:   3'- gGUUC-UCGau--AGCUgCCCgCUCCugC- -5'
30136 3' -54.7 NC_006273.1 + 145691 0.66 0.985679
Target:  5'- aCgAAGGGgaGgacgaugCGACGGG-GAGGAUGa -3'
miRNA:   3'- -GgUUCUCgaUa------GCUGCCCgCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 189321 0.66 0.985679
Target:  5'- aCCugcGGC-GUCGGCGGGUGGGuGGCc -3'
miRNA:   3'- -GGuucUCGaUAGCUGCCCGCUC-CUGc -5'
30136 3' -54.7 NC_006273.1 + 193681 0.66 0.985679
Target:  5'- uCCAGcuuGuCUGacUUGGCGGGCGAGGcCGu -3'
miRNA:   3'- -GGUUcu-C-GAU--AGCUGCCCGCUCCuGC- -5'
30136 3' -54.7 NC_006273.1 + 223123 0.66 0.983971
Target:  5'- gCAGGAGCaccaGACGGGCcuggcuAGGugGc -3'
miRNA:   3'- gGUUCUCGauagCUGCCCGc-----UCCugC- -5'
30136 3' -54.7 NC_006273.1 + 195086 0.66 0.982113
Target:  5'- gUCAAGAGCa--CGACGGGCauGAaaacGGugGc -3'
miRNA:   3'- -GGUUCUCGauaGCUGCCCG--CU----CCugC- -5'
30136 3' -54.7 NC_006273.1 + 54910 0.66 0.982113
Target:  5'- aCCAGGcAGUacggggGUCGAUaGGGCGGuGGGCu -3'
miRNA:   3'- -GGUUC-UCGa-----UAGCUG-CCCGCU-CCUGc -5'
30136 3' -54.7 NC_006273.1 + 15682 0.66 0.980097
Target:  5'- ---cGAcGCguucGUCGACGcGCGAGGGCGc -3'
miRNA:   3'- gguuCU-CGa---UAGCUGCcCGCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 115566 0.66 0.979886
Target:  5'- aCCGGGGugguggugcugcuGCUGUUG-UGGGUGcGGACGg -3'
miRNA:   3'- -GGUUCU-------------CGAUAGCuGCCCGCuCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 149595 0.66 0.979886
Target:  5'- gCAAGAaaGCUGUaggggGAgGGGCGAaugggcaGGACGg -3'
miRNA:   3'- gGUUCU--CGAUAg----CUgCCCGCU-------CCUGC- -5'
30136 3' -54.7 NC_006273.1 + 33234 0.66 0.977917
Target:  5'- aCCGAGGGCcc-CGGgGcGGCGAcGACGg -3'
miRNA:   3'- -GGUUCUCGauaGCUgC-CCGCUcCUGC- -5'
30136 3' -54.7 NC_006273.1 + 1238 0.66 0.977917
Target:  5'- -nGGGGGaCUcuugCGGCGGGgaCGGGGACGg -3'
miRNA:   3'- ggUUCUC-GAua--GCUGCCC--GCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 80934 0.66 0.977917
Target:  5'- aCC-AGAGC--UCGACGGGCu-GcGGCGa -3'
miRNA:   3'- -GGuUCUCGauAGCUGCCCGcuC-CUGC- -5'
30136 3' -54.7 NC_006273.1 + 41176 0.66 0.977917
Target:  5'- -nGGGGGaCUcuugCGGCGGGgaCGGGGACGg -3'
miRNA:   3'- ggUUCUC-GAua--GCUGCCC--GCUCCUGC- -5'
30136 3' -54.7 NC_006273.1 + 64082 0.66 0.977917
Target:  5'- gCCAucAGAGCag-CGGCGGGgCGAgcaccGGACc -3'
miRNA:   3'- -GGU--UCUCGauaGCUGCCC-GCU-----CCUGc -5'
30136 3' -54.7 NC_006273.1 + 18251 0.67 0.975565
Target:  5'- aCUggGAGac--CGACGGGCucuacGAGGugGc -3'
miRNA:   3'- -GGuuCUCgauaGCUGCCCG-----CUCCugC- -5'
30136 3' -54.7 NC_006273.1 + 161797 0.67 0.975565
Target:  5'- gCAGcGGCag-CGGCGGGCcAGGACa -3'
miRNA:   3'- gGUUcUCGauaGCUGCCCGcUCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.