miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30137 3' -52 NC_006273.1 + 104501 0.66 0.998115
Target:  5'- aCGUCGaacgcGAUCGGCGGccgGGUcgcgCGGCa -3'
miRNA:   3'- -GCAGUc----UUAGCUGCCa--CCAaa--GCCGc -5'
30137 3' -52 NC_006273.1 + 149552 0.66 0.998115
Target:  5'- --cUAGcggCGGCGGUGGUagUGGCGu -3'
miRNA:   3'- gcaGUCuuaGCUGCCACCAaaGCCGC- -5'
30137 3' -52 NC_006273.1 + 38636 0.66 0.998115
Target:  5'- cCGUCAGcagCGACGcG-GGgugCGGCGc -3'
miRNA:   3'- -GCAGUCuuaGCUGC-CaCCaaaGCCGC- -5'
30137 3' -52 NC_006273.1 + 169019 0.66 0.997912
Target:  5'- aCGUagUAGAcgUGACGGUGGUaUuacuaggggaagugaCGGCGc -3'
miRNA:   3'- -GCA--GUCUuaGCUGCCACCAaA---------------GCCGC- -5'
30137 3' -52 NC_006273.1 + 230483 0.66 0.997767
Target:  5'- gCGggcGAAUCGGcCGGcUGGUcggUCGGCGc -3'
miRNA:   3'- -GCaguCUUAGCU-GCC-ACCAa--AGCCGC- -5'
30137 3' -52 NC_006273.1 + 100463 0.66 0.997767
Target:  5'- gCGcCGGuGUCGGCGGauUGGUUcCGGUu -3'
miRNA:   3'- -GCaGUCuUAGCUGCC--ACCAAaGCCGc -5'
30137 3' -52 NC_006273.1 + 137724 0.66 0.997767
Target:  5'- gGUguGGuGUCGAUGGUGcGUUuuuuuuugccUCGGCa -3'
miRNA:   3'- gCAguCU-UAGCUGCCAC-CAA----------AGCCGc -5'
30137 3' -52 NC_006273.1 + 57158 0.66 0.997368
Target:  5'- gGUCAGGAUaaacuugaUGGcCGGUGGac-CGGCGu -3'
miRNA:   3'- gCAGUCUUA--------GCU-GCCACCaaaGCCGC- -5'
30137 3' -52 NC_006273.1 + 41572 0.66 0.99691
Target:  5'- aCGUCGGuugcUCGaacuuguacGCGGUGGUgacgggcggUUUGGCGc -3'
miRNA:   3'- -GCAGUCuu--AGC---------UGCCACCA---------AAGCCGC- -5'
30137 3' -52 NC_006273.1 + 177101 0.66 0.996552
Target:  5'- uGUCAGuuUCuGGCGGUGGgucccgacgacgaggUGGCGc -3'
miRNA:   3'- gCAGUCuuAG-CUGCCACCaaa------------GCCGC- -5'
30137 3' -52 NC_006273.1 + 87516 0.66 0.996388
Target:  5'- uGUCGGAGUuugccagcgcggCGGCGGUcucugucucuGGUgccgCGGCGc -3'
miRNA:   3'- gCAGUCUUA------------GCUGCCA----------CCAaa--GCCGC- -5'
30137 3' -52 NC_006273.1 + 167275 0.66 0.996388
Target:  5'- gCGguggCGGGcaUGACGG-GGUUUgCGGCGa -3'
miRNA:   3'- -GCa---GUCUuaGCUGCCaCCAAA-GCCGC- -5'
30137 3' -52 NC_006273.1 + 234864 0.66 0.99616
Target:  5'- uGUCGGGGgcgCGGCGGggugGGUgugugccgggugUGGCGg -3'
miRNA:   3'- gCAGUCUUa--GCUGCCa---CCAaa----------GCCGC- -5'
30137 3' -52 NC_006273.1 + 33 0.66 0.99616
Target:  5'- uGUCGGGGgcgCGGCGGggugGGUgugugccgggugUGGCGg -3'
miRNA:   3'- gCAGUCUUa--GCUGCCa---CCAaa----------GCCGC- -5'
30137 3' -52 NC_006273.1 + 194926 0.66 0.99616
Target:  5'- uGUCGGGGgcgCGGCGGggugGGUgugugccgggugUGGCGg -3'
miRNA:   3'- gCAGUCUUa--GCUGCCa---CCAaa----------GCCGC- -5'
30137 3' -52 NC_006273.1 + 108835 0.67 0.995796
Target:  5'- cCGUCA----CGACGGUGGUUUCccGCu -3'
miRNA:   3'- -GCAGUcuuaGCUGCCACCAAAGc-CGc -5'
30137 3' -52 NC_006273.1 + 55064 0.67 0.995405
Target:  5'- uGUCGGuggcagugacggCGACGGUGGUaacugUGGUGg -3'
miRNA:   3'- gCAGUCuua---------GCUGCCACCAaa---GCCGC- -5'
30137 3' -52 NC_006273.1 + 179025 0.67 0.995127
Target:  5'- cCGgCGGAGaCGACGGcGGUUUCaGCu -3'
miRNA:   3'- -GCaGUCUUaGCUGCCaCCAAAGcCGc -5'
30137 3' -52 NC_006273.1 + 195117 0.67 0.995127
Target:  5'- uGUCAGGGgugUGuCGG-GGUgugUUGGCGg -3'
miRNA:   3'- gCAGUCUUa--GCuGCCaCCAa--AGCCGC- -5'
30137 3' -52 NC_006273.1 + 99493 0.67 0.995127
Target:  5'- uCGUCuucuugCGGuacCGGUGGUggCGGCGg -3'
miRNA:   3'- -GCAGucuua-GCU---GCCACCAaaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.