miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30137 5' -59.8 NC_006273.1 + 136029 0.66 0.872512
Target:  5'- aGCGCUGgccgaUCCgcggGCCGCGUUCC-GAg -3'
miRNA:   3'- gCGCGACaga--AGG----UGGCGCGAGGgCU- -5'
30137 5' -59.8 NC_006273.1 + 13922 0.66 0.872512
Target:  5'- uGUGcCUGUCaUCCACUugGagaGCUCCCGc -3'
miRNA:   3'- gCGC-GACAGaAGGUGG--Cg--CGAGGGCu -5'
30137 5' -59.8 NC_006273.1 + 227742 0.66 0.870436
Target:  5'- uCGCaGCUGUCUucgCCGCCGCaGCuguagcaguuaacgUCgCCGGc -3'
miRNA:   3'- -GCG-CGACAGAa--GGUGGCG-CG--------------AG-GGCU- -5'
30137 5' -59.8 NC_006273.1 + 233217 0.66 0.865525
Target:  5'- cCGCuGCUGccgCUgccgCCGCCGuCGCguccgcCCCGAc -3'
miRNA:   3'- -GCG-CGACa--GAa---GGUGGC-GCGa-----GGGCU- -5'
30137 5' -59.8 NC_006273.1 + 190888 0.66 0.865525
Target:  5'- gCGCGCgugUGUCUcaCCGCCGCuCgCCCGu -3'
miRNA:   3'- -GCGCG---ACAGAa-GGUGGCGcGaGGGCu -5'
30137 5' -59.8 NC_006273.1 + 87859 0.66 0.865525
Target:  5'- gGCGCg--CccCCAUCGC-CUCCCGAg -3'
miRNA:   3'- gCGCGacaGaaGGUGGCGcGAGGGCU- -5'
30137 5' -59.8 NC_006273.1 + 38324 0.66 0.865525
Target:  5'- cCGCuGCUGccgCUgccgCCGCCGuCGCguccgcCCCGAc -3'
miRNA:   3'- -GCG-CGACa--GAa---GGUGGC-GCGa-----GGGCU- -5'
30137 5' -59.8 NC_006273.1 + 133388 0.66 0.863392
Target:  5'- gGCGCUGgaggccuuggauccUCcgCCGCCGCGCg-UCGAg -3'
miRNA:   3'- gCGCGAC--------------AGaaGGUGGCGCGagGGCU- -5'
30137 5' -59.8 NC_006273.1 + 105887 0.66 0.85835
Target:  5'- uCGCGCUGcUUUCC-CCGaGCUCCg-- -3'
miRNA:   3'- -GCGCGACaGAAGGuGGCgCGAGGgcu -5'
30137 5' -59.8 NC_006273.1 + 131242 0.66 0.85835
Target:  5'- cCGCGCUcucGUCcaUCGCCGCGUcgggUCUCGGc -3'
miRNA:   3'- -GCGCGA---CAGaaGGUGGCGCG----AGGGCU- -5'
30137 5' -59.8 NC_006273.1 + 145418 0.66 0.85835
Target:  5'- gGuCGC-GUUUUCCACUGCGaccacaUCCCGc -3'
miRNA:   3'- gC-GCGaCAGAAGGUGGCGCg-----AGGGCu -5'
30137 5' -59.8 NC_006273.1 + 36486 0.66 0.850994
Target:  5'- gCGUGCUGUUUUCCguguugccgacgGCgGCGCggUCCGu -3'
miRNA:   3'- -GCGCGACAGAAGG------------UGgCGCGa-GGGCu -5'
30137 5' -59.8 NC_006273.1 + 44463 0.66 0.843461
Target:  5'- -uUGCUGga--CCGCCGCGCuuUCCUGAg -3'
miRNA:   3'- gcGCGACagaaGGUGGCGCG--AGGGCU- -5'
30137 5' -59.8 NC_006273.1 + 198350 0.66 0.843461
Target:  5'- aCGUGCUGUCgUUCUucgcuuGCUGCGaagCCCGu -3'
miRNA:   3'- -GCGCGACAG-AAGG------UGGCGCga-GGGCu -5'
30137 5' -59.8 NC_006273.1 + 202789 0.66 0.843461
Target:  5'- gCGCGCUG-CUgcgUCACCGUGUgacgCCgGGc -3'
miRNA:   3'- -GCGCGACaGAa--GGUGGCGCGa---GGgCU- -5'
30137 5' -59.8 NC_006273.1 + 43261 0.66 0.843461
Target:  5'- aGcCGCcugggacuUGUCUagCCGCUGcCGCUCCCGu -3'
miRNA:   3'- gC-GCG--------ACAGAa-GGUGGC-GCGAGGGCu -5'
30137 5' -59.8 NC_006273.1 + 201961 0.66 0.843461
Target:  5'- gGgGCUGUCgcgcgCCGCCGacg-CCCGAg -3'
miRNA:   3'- gCgCGACAGaa---GGUGGCgcgaGGGCU- -5'
30137 5' -59.8 NC_006273.1 + 154995 0.66 0.835757
Target:  5'- uGCGCcG-CUgCCGCCGCcacggccgccGCUCCCGc -3'
miRNA:   3'- gCGCGaCaGAaGGUGGCG----------CGAGGGCu -5'
30137 5' -59.8 NC_006273.1 + 138044 0.66 0.835757
Target:  5'- gGCGcCUGguugCUGCCGCG-UCCCGAa -3'
miRNA:   3'- gCGC-GACagaaGGUGGCGCgAGGGCU- -5'
30137 5' -59.8 NC_006273.1 + 217715 0.67 0.827889
Target:  5'- aCGCGCcGcCUa-CACaaaGUGCUCCCGAa -3'
miRNA:   3'- -GCGCGaCaGAagGUGg--CGCGAGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.