miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30138 5' -50.9 NC_006273.1 + 121754 0.66 0.998307
Target:  5'- ---gAGUgCGACAGCGUGaCCgCGGGGUCg -3'
miRNA:   3'- cagaUCG-GUUGUUGCAC-GG-GUUCUAG- -5'
30138 5' -50.9 NC_006273.1 + 93323 0.66 0.998307
Target:  5'- cGUCgccGCUGGCGGCGcUGCCgCGAGAc- -3'
miRNA:   3'- -CAGau-CGGUUGUUGC-ACGG-GUUCUag -5'
30138 5' -50.9 NC_006273.1 + 192684 0.66 0.998307
Target:  5'- -cCUGGCCGGCugucUGcGCCCA-GAUCu -3'
miRNA:   3'- caGAUCGGUUGuu--GCaCGGGUuCUAG- -5'
30138 5' -50.9 NC_006273.1 + 187387 0.66 0.998307
Target:  5'- cUCUGGUUAGCGACGUGgaCCGAcGAc- -3'
miRNA:   3'- cAGAUCGGUUGUUGCACg-GGUU-CUag -5'
30138 5' -50.9 NC_006273.1 + 71501 0.66 0.998307
Target:  5'- --gUGGCCAGCAcCGggugggugGCCUcuGAGAUCu -3'
miRNA:   3'- cagAUCGGUUGUuGCa-------CGGG--UUCUAG- -5'
30138 5' -50.9 NC_006273.1 + 96383 0.66 0.99794
Target:  5'- -gCUGGCCAAUcGCGUGCugcaguaccucauCCAcgccuuccAGAUCg -3'
miRNA:   3'- caGAUCGGUUGuUGCACG-------------GGU--------UCUAG- -5'
30138 5' -50.9 NC_006273.1 + 60536 0.66 0.997592
Target:  5'- -cCUGGCCGGCAccgAUGUGCgggcaCCGAGGa- -3'
miRNA:   3'- caGAUCGGUUGU---UGCACG-----GGUUCUag -5'
30138 5' -50.9 NC_006273.1 + 164558 0.66 0.997592
Target:  5'- gGUC-GGCCcgcCAGCGUGCCgAAGGc- -3'
miRNA:   3'- -CAGaUCGGuu-GUUGCACGGgUUCUag -5'
30138 5' -50.9 NC_006273.1 + 1230 0.66 0.997149
Target:  5'- uUCUGGCCAACAgcACGggccgcgccaUGCgCAAGugGUCg -3'
miRNA:   3'- cAGAUCGGUUGU--UGC----------ACGgGUUC--UAG- -5'
30138 5' -50.9 NC_006273.1 + 85658 0.66 0.997149
Target:  5'- ----cGCCGGCAGcCG-GCCCAGGAc- -3'
miRNA:   3'- cagauCGGUUGUU-GCaCGGGUUCUag -5'
30138 5' -50.9 NC_006273.1 + 47810 0.66 0.997149
Target:  5'- cUCUgGGCCAGgAGuCGgaaCCCGAGAUCa -3'
miRNA:   3'- cAGA-UCGGUUgUU-GCac-GGGUUCUAG- -5'
30138 5' -50.9 NC_006273.1 + 196123 0.66 0.997149
Target:  5'- uUCUGGCCAACAgcACGggccgcgccaUGCgCAAGugGUCg -3'
miRNA:   3'- cAGAUCGGUUGU--UGC----------ACGgGUUC--UAG- -5'
30138 5' -50.9 NC_006273.1 + 112251 0.66 0.997149
Target:  5'- -gCUGGCgCGAgGACGUGCUCAuGGAc- -3'
miRNA:   3'- caGAUCG-GUUgUUGCACGGGU-UCUag -5'
30138 5' -50.9 NC_006273.1 + 124197 0.66 0.997101
Target:  5'- cGUCUGGCuCGuggcCGACGgGCCCGauuccgaagguugGGGUCg -3'
miRNA:   3'- -CAGAUCG-GUu---GUUGCaCGGGU-------------UCUAG- -5'
30138 5' -50.9 NC_006273.1 + 44209 0.66 0.99606
Target:  5'- gGUCUAGUCAugGGgGUuaCCGuGAUCg -3'
miRNA:   3'- -CAGAUCGGUugUUgCAcgGGUuCUAG- -5'
30138 5' -50.9 NC_006273.1 + 195225 0.66 0.99606
Target:  5'- uGUCUGGCCGuuguuuuGCGUGugucCCCAAGGa- -3'
miRNA:   3'- -CAGAUCGGUugu----UGCAC----GGGUUCUag -5'
30138 5' -50.9 NC_006273.1 + 179042 0.66 0.99606
Target:  5'- gGUUUcAGCUGGCAACGUGCCaCGuGAcUCa -3'
miRNA:   3'- -CAGA-UCGGUUGUUGCACGG-GUuCU-AG- -5'
30138 5' -50.9 NC_006273.1 + 332 0.66 0.99606
Target:  5'- uGUCUGGCCGuuguuuuGCGUGugucCCCAAGGa- -3'
miRNA:   3'- -CAGAUCGGUugu----UGCAC----GGGUUCUag -5'
30138 5' -50.9 NC_006273.1 + 235163 0.66 0.99606
Target:  5'- uGUCUGGCCGuuguuuuGCGUGugucCCCAAGGa- -3'
miRNA:   3'- -CAGAUCGGUugu----UGCAC----GGGUUCUag -5'
30138 5' -50.9 NC_006273.1 + 95230 0.67 0.995399
Target:  5'- cGUCUA--CGACGGCGUuugGCCCGAGAc- -3'
miRNA:   3'- -CAGAUcgGUUGUUGCA---CGGGUUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.