miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30139 3' -59.9 NC_006273.1 + 157730 0.66 0.879062
Target:  5'- gCGCCGCCGUgagcaucugcgugauGCaGUCGcAGGGGAugugcACGuCg -3'
miRNA:   3'- -GCGGCGGCG---------------CG-CAGC-UCCUCU-----UGCuG- -5'
30139 3' -59.9 NC_006273.1 + 74592 0.66 0.876381
Target:  5'- cCGCCGCCcaacuGCGCGUCccAGGuAGGugGuCc -3'
miRNA:   3'- -GCGGCGG-----CGCGCAGc-UCC-UCUugCuG- -5'
30139 3' -59.9 NC_006273.1 + 82297 0.66 0.876381
Target:  5'- gGCCGCgGCGUGgaugaCGAGGccgucauCGACa -3'
miRNA:   3'- gCGGCGgCGCGCa----GCUCCucuu---GCUG- -5'
30139 3' -59.9 NC_006273.1 + 118171 0.66 0.876381
Target:  5'- aGCCGCCG-GCGUgGcGGccuGAcuGCGGCu -3'
miRNA:   3'- gCGGCGGCgCGCAgCuCCu--CU--UGCUG- -5'
30139 3' -59.9 NC_006273.1 + 140431 0.66 0.876381
Target:  5'- aGCCGCCGCGagacccggaagcCGUCGcGGu---CGACc -3'
miRNA:   3'- gCGGCGGCGC------------GCAGCuCCucuuGCUG- -5'
30139 3' -59.9 NC_006273.1 + 69445 0.66 0.876381
Target:  5'- gCGCCGCUGUaGCGgcgGAGGAcucaaGAACGuCg -3'
miRNA:   3'- -GCGGCGGCG-CGCag-CUCCU-----CUUGCuG- -5'
30139 3' -59.9 NC_006273.1 + 195976 0.66 0.876381
Target:  5'- gGCCGCCGgGCGcCccuccGAGuAGCGGCa -3'
miRNA:   3'- gCGGCGGCgCGCaGcuc--CUC-UUGCUG- -5'
30139 3' -59.9 NC_006273.1 + 1083 0.66 0.876381
Target:  5'- gGCCGCCGgGCGcCccuccGAGuAGCGGCa -3'
miRNA:   3'- gCGGCGGCgCGCaGcuc--CUC-UUGCUG- -5'
30139 3' -59.9 NC_006273.1 + 105821 0.66 0.875029
Target:  5'- aGCCGCCGacgacuauuagaGCGUCacagccGAGGcGGcGCGGCg -3'
miRNA:   3'- gCGGCGGCg-----------CGCAG------CUCC-UCuUGCUG- -5'
30139 3' -59.9 NC_006273.1 + 13284 0.66 0.873669
Target:  5'- aGCCGUacugaGCGUG-CGAGGcggguaggcugccGAACGACg -3'
miRNA:   3'- gCGGCGg----CGCGCaGCUCCu------------CUUGCUG- -5'
30139 3' -59.9 NC_006273.1 + 45185 0.66 0.869544
Target:  5'- aGCCGCUgcuguucaGCGUGUUacaAGGAGAcgaugauuuACGACa -3'
miRNA:   3'- gCGGCGG--------CGCGCAGc--UCCUCU---------UGCUG- -5'
30139 3' -59.9 NC_006273.1 + 7134 0.66 0.869544
Target:  5'- aCGCCGUauguagaagacgUGCGgGUCGcGGGAGGcacuuCGGCg -3'
miRNA:   3'- -GCGGCG------------GCGCgCAGC-UCCUCUu----GCUG- -5'
30139 3' -59.9 NC_006273.1 + 19068 0.66 0.86885
Target:  5'- aCGCUGCCgGCGCuacaGGGGGGAuuaugggaggauaACGAUg -3'
miRNA:   3'- -GCGGCGG-CGCGcag-CUCCUCU-------------UGCUG- -5'
30139 3' -59.9 NC_006273.1 + 163857 0.66 0.867456
Target:  5'- gGCCGCCG-GCGagggcccucguuccUCGAGGAcGGACu-- -3'
miRNA:   3'- gCGGCGGCgCGC--------------AGCUCCU-CUUGcug -5'
30139 3' -59.9 NC_006273.1 + 191404 0.66 0.86252
Target:  5'- uCGUCGCCGUaGcCGUCGucGAGcGCGAg -3'
miRNA:   3'- -GCGGCGGCG-C-GCAGCucCUCuUGCUg -5'
30139 3' -59.9 NC_006273.1 + 174886 0.66 0.86252
Target:  5'- aGCCGCaGCGCGgaaacCGAgacGGAGGAaucguCGGCa -3'
miRNA:   3'- gCGGCGgCGCGCa----GCU---CCUCUU-----GCUG- -5'
30139 3' -59.9 NC_006273.1 + 95839 0.66 0.86252
Target:  5'- cCGCCGCCGCcaucaUGUUGcgcGGAGAuuCGGCc -3'
miRNA:   3'- -GCGGCGGCGc----GCAGCu--CCUCUu-GCUG- -5'
30139 3' -59.9 NC_006273.1 + 162206 0.66 0.86252
Target:  5'- gGCCGCgGUGCGcUGcagccGGAGGaaGCGGCg -3'
miRNA:   3'- gCGGCGgCGCGCaGCu----CCUCU--UGCUG- -5'
30139 3' -59.9 NC_006273.1 + 230544 0.66 0.86252
Target:  5'- aGCCGCC-CGUGgCcGGGAGAA-GACg -3'
miRNA:   3'- gCGGCGGcGCGCaGcUCCUCUUgCUG- -5'
30139 3' -59.9 NC_006273.1 + 132559 0.66 0.86252
Target:  5'- aCGCgGCCgGCGCGccuuUCGAuGAcGACGACu -3'
miRNA:   3'- -GCGgCGG-CGCGC----AGCUcCUcUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.