miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30139 5' -51.2 NC_006273.1 + 133827 0.66 0.998955
Target:  5'- aCGCCGcgcccGUCGCg--CACGGCGc -3'
miRNA:   3'- cGCGGCaauaaUAGCGucaGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 70930 0.66 0.998955
Target:  5'- cGCGCCGacAUcGUCaucgaGCGGcCGCGGCc -3'
miRNA:   3'- -CGCGGCaaUAaUAG-----CGUCaGUGCCGc -5'
30139 5' -51.2 NC_006273.1 + 43085 0.66 0.998955
Target:  5'- -gGUCGggGUUGUggaaaCGCAGcUCGCGGUa -3'
miRNA:   3'- cgCGGCaaUAAUA-----GCGUC-AGUGCCGc -5'
30139 5' -51.2 NC_006273.1 + 61472 0.66 0.998955
Target:  5'- cGCGCCGUgag---CGCcuGGUgAuCGGCGu -3'
miRNA:   3'- -CGCGGCAauaauaGCG--UCAgU-GCCGC- -5'
30139 5' -51.2 NC_006273.1 + 195805 0.66 0.998808
Target:  5'- cGCGCCccccgccccucgGUCGCGGcCGCGGgGc -3'
miRNA:   3'- -CGCGGcaauaa------UAGCGUCaGUGCCgC- -5'
30139 5' -51.2 NC_006273.1 + 913 0.66 0.998808
Target:  5'- cGCGCCccccgccccucgGUCGCGGcCGCGGgGc -3'
miRNA:   3'- -CGCGGcaauaa------UAGCGUCaGUGCCgC- -5'
30139 5' -51.2 NC_006273.1 + 6278 0.66 0.99874
Target:  5'- aGCGCCGgguacUGUgg-CGCAGUCGuuuccaccaGGUGa -3'
miRNA:   3'- -CGCGGCa----AUAauaGCGUCAGUg--------CCGC- -5'
30139 5' -51.2 NC_006273.1 + 139856 0.66 0.99874
Target:  5'- aCGCCGggUGggacgGUCGUGGUCuccuCGGCc -3'
miRNA:   3'- cGCGGCa-AUaa---UAGCGUCAGu---GCCGc -5'
30139 5' -51.2 NC_006273.1 + 42729 0.66 0.998716
Target:  5'- cGUGCCGguccagGUUAaggucgagcgguuUCGCAcagaacauGUUACGGCGc -3'
miRNA:   3'- -CGCGGCaa----UAAU-------------AGCGU--------CAGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 162766 0.66 0.998487
Target:  5'- gGUGCUGgcg--GUgGUGGUgGCGGCGg -3'
miRNA:   3'- -CGCGGCaauaaUAgCGUCAgUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 233662 0.66 0.998487
Target:  5'- uGCGCUGUcggcccaGUCGCcaccGcCGCGGCGg -3'
miRNA:   3'- -CGCGGCAauaa---UAGCGu---CaGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 138906 0.66 0.998487
Target:  5'- uUGCCGUgac-GUCGCGGcaccaggaaCACGGUGg -3'
miRNA:   3'- cGCGGCAauaaUAGCGUCa--------GUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 166229 0.66 0.99846
Target:  5'- --cCCGUUGUUggaggugguagaaGUCGCGgccgguGUCACGGUGg -3'
miRNA:   3'- cgcGGCAAUAA-------------UAGCGU------CAGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 155576 0.66 0.998404
Target:  5'- aGCGUCGgcuccggcaGUAGUgGCGGCGu -3'
miRNA:   3'- -CGCGGCaauaauag-CGUCAgUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 167167 0.66 0.998193
Target:  5'- cCGCCGUUG-----GUGGcCACGGCGg -3'
miRNA:   3'- cGCGGCAAUaauagCGUCaGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 123100 0.66 0.998193
Target:  5'- gGCGCCucgGUgcgGUCGCAgGUCACGuuGa -3'
miRNA:   3'- -CGCGGcaaUAa--UAGCGU-CAGUGCcgC- -5'
30139 5' -51.2 NC_006273.1 + 1208 0.66 0.998193
Target:  5'- gGCGCCGU----GUgGCg--CGCGGCGu -3'
miRNA:   3'- -CGCGGCAauaaUAgCGucaGUGCCGC- -5'
30139 5' -51.2 NC_006273.1 + 63169 0.66 0.998193
Target:  5'- uGCGuCCGUc----UCGCGG-CGCGGCc -3'
miRNA:   3'- -CGC-GGCAauaauAGCGUCaGUGCCGc -5'
30139 5' -51.2 NC_006273.1 + 88038 0.66 0.998193
Target:  5'- gGCGuCCGUUA--AUCGCuGggCGuCGGCGu -3'
miRNA:   3'- -CGC-GGCAAUaaUAGCGuCa-GU-GCCGC- -5'
30139 5' -51.2 NC_006273.1 + 196101 0.66 0.998193
Target:  5'- gGCGCCGU----GUgGCg--CGCGGCGu -3'
miRNA:   3'- -CGCGGCAauaaUAgCGucaGUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.