miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 117554 0.66 0.949305
Target:  5'- cCGUCAUguauccCGGCGCCGU----AGCGGCc -3'
miRNA:   3'- uGUAGUA------GUCGCGGCAcgagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217971 0.66 0.949305
Target:  5'- uCGUCGUCAuCGCucuCGUgGC-CGGCGGCc -3'
miRNA:   3'- uGUAGUAGUcGCG---GCA-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 148788 0.66 0.948893
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 175066 0.66 0.948064
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 215540 0.66 0.947645
Target:  5'- gACAgCGUCAGaCGCacgcuggaaaagaGUGCUCcagccgguGCGGCa -3'
miRNA:   3'- -UGUaGUAGUC-GCGg------------CACGAGu-------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217898 0.66 0.946803
Target:  5'- cACAUUGUaugugaaguggCAGUGUCGUGUUgugcuucaacguuacCGGCGGCg -3'
miRNA:   3'- -UGUAGUA-----------GUCGCGGCACGA---------------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 169725 0.66 0.94509
Target:  5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3'
miRNA:   3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 191528 0.66 0.94509
Target:  5'- gUAUCgGUCGGCGgCGaucaggGCUaCGGUGGCa -3'
miRNA:   3'- uGUAG-UAGUCGCgGCa-----CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 30573 0.66 0.94509
Target:  5'- cCGUCGUCcuucgAGC-UCGUGCgcgagacCGGCGGCa -3'
miRNA:   3'- uGUAGUAG-----UCGcGGCACGa------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 157794 0.66 0.94509
Target:  5'- gACGUgCAUguGCaaccgGCCGUuCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 106217 0.66 0.94509
Target:  5'- cACGUaca-GGUGCCGcgggugGC-CAGCGGCg -3'
miRNA:   3'- -UGUAguagUCGCGGCa-----CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 112070 0.66 0.942455
Target:  5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3'
miRNA:   3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 119294 0.66 0.940653
Target:  5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3'
miRNA:   3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 16027 0.66 0.940653
Target:  5'- ---aCAUCAGCGCaCGgugguuucGCUgGGaCGGCa -3'
miRNA:   3'- uguaGUAGUCGCG-GCa-------CGAgUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 217545 0.66 0.940653
Target:  5'- aGCGcUCGUC-GCGCUgucgggauagGUGCcccaggcuUCGGCGGCg -3'
miRNA:   3'- -UGU-AGUAGuCGCGG----------CACG--------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 198092 0.66 0.940197
Target:  5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 51602 0.66 0.940197
Target:  5'- aGCGggGUCuucuuccgacacgGGCGaCGgcagGCUCGGCGGCg -3'
miRNA:   3'- -UGUagUAG-------------UCGCgGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 164439 0.66 0.939278
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 92597 0.66 0.93599
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 37754 0.66 0.93599
Target:  5'- gGCAUCGUugCAGCGuCCG-GUUUGGUuuGGCg -3'
miRNA:   3'- -UGUAGUA--GUCGC-GGCaCGAGUCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.