miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 51602 0.66 0.940197
Target:  5'- aGCGggGUCuucuuccgacacgGGCGaCGgcagGCUCGGCGGCg -3'
miRNA:   3'- -UGUagUAG-------------UCGCgGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 34236 0.66 0.925984
Target:  5'- cGCggCA-CAGgGCCGccgGCaggCAGCGGCc -3'
miRNA:   3'- -UGuaGUaGUCgCGGCa--CGa--GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 72460 0.66 0.925984
Target:  5'- cGCAcCGUCGGUGCCGgcgGCcacguccgUCA-CGGCg -3'
miRNA:   3'- -UGUaGUAGUCGCGGCa--CG--------AGUcGCCG- -5'
30140 3' -56.5 NC_006273.1 + 117554 0.66 0.949305
Target:  5'- cCGUCAUguauccCGGCGCCGU----AGCGGCc -3'
miRNA:   3'- uGUAGUA------GUCGCGGCAcgagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 193149 0.66 0.93599
Target:  5'- cACGUgugCGGCcuGCUGUGCUCuGCGGa -3'
miRNA:   3'- -UGUAguaGUCG--CGGCACGAGuCGCCg -5'
30140 3' -56.5 NC_006273.1 + 155427 0.66 0.925984
Target:  5'- cUAUCAUCucuaccGcCGCCGUGCcCGGCGacGCg -3'
miRNA:   3'- uGUAGUAGu-----C-GCGGCACGaGUCGC--CG- -5'
30140 3' -56.5 NC_006273.1 + 130283 0.66 0.931101
Target:  5'- uGCGUCcgCAaGCGCCGUGCgCGuUGGa -3'
miRNA:   3'- -UGUAGuaGU-CGCGGCACGaGUcGCCg -5'
30140 3' -56.5 NC_006273.1 + 30573 0.66 0.94509
Target:  5'- cCGUCGUCcuucgAGC-UCGUGCgcgagacCGGCGGCa -3'
miRNA:   3'- uGUAGUAG-----UCGcGGCACGa------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 215540 0.66 0.947645
Target:  5'- gACAgCGUCAGaCGCacgcuggaaaagaGUGCUCcagccgguGCGGCa -3'
miRNA:   3'- -UGUaGUAGUC-GCGg------------CACGAGu-------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 233710 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 166150 0.66 0.925984
Target:  5'- cGCAUgAUCAGCGCggggucggucuCGUGUgUUGGCGGa -3'
miRNA:   3'- -UGUAgUAGUCGCG-----------GCACG-AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 16027 0.66 0.940653
Target:  5'- ---aCAUCAGCGCaCGgugguuucGCUgGGaCGGCa -3'
miRNA:   3'- uguaGUAGUCGCG-GCa-------CGAgUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 153967 0.66 0.931101
Target:  5'- uGCAUCAUCuGCGUCGguucGCccacgCAGaccgaGGCg -3'
miRNA:   3'- -UGUAGUAGuCGCGGCa---CGa----GUCg----CCG- -5'
30140 3' -56.5 NC_006273.1 + 215028 0.66 0.93599
Target:  5'- cCGUCGUCugagcagugugGGCGCUGccggGCUCGGaaGGCa -3'
miRNA:   3'- uGUAGUAG-----------UCGCGGCa---CGAGUCg-CCG- -5'
30140 3' -56.5 NC_006273.1 + 217971 0.66 0.949305
Target:  5'- uCGUCGUCAuCGCucuCGUgGC-CGGCGGCc -3'
miRNA:   3'- uGUAGUAGUcGCG---GCA-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 58555 0.66 0.93599
Target:  5'- aACcgCAUgAGCGCCGUGUgcaAGCcaGCc -3'
miRNA:   3'- -UGuaGUAgUCGCGGCACGag-UCGc-CG- -5'
30140 3' -56.5 NC_006273.1 + 148788 0.66 0.948893
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 38818 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 171207 0.66 0.931101
Target:  5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3'
miRNA:   3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217545 0.66 0.940653
Target:  5'- aGCGcUCGUC-GCGCUgucgggauagGUGCcccaggcuUCGGCGGCg -3'
miRNA:   3'- -UGU-AGUAGuCGCGG----------CACG--------AGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.