miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 130283 0.66 0.931101
Target:  5'- uGCGUCcgCAaGCGCCGUGCgCGuUGGa -3'
miRNA:   3'- -UGUAGuaGU-CGCGGCACGaGUcGCCg -5'
30140 3' -56.5 NC_006273.1 + 166150 0.66 0.925984
Target:  5'- cGCAUgAUCAGCGCggggucggucuCGUGUgUUGGCGGa -3'
miRNA:   3'- -UGUAgUAGUCGCG-----------GCACG-AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 157794 0.66 0.94509
Target:  5'- gACGUgCAUguGCaaccgGCCGUuCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 233179 0.66 0.93599
Target:  5'- cGCGUCGUgccCAGCGCCauGUGCgggUCGuuuCGGCg -3'
miRNA:   3'- -UGUAGUA---GUCGCGG--CACG---AGUc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 106217 0.66 0.94509
Target:  5'- cACGUaca-GGUGCCGcgggugGC-CAGCGGCg -3'
miRNA:   3'- -UGUAguagUCGCGGCa-----CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 38818 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 171207 0.66 0.931101
Target:  5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3'
miRNA:   3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 106804 0.66 0.934547
Target:  5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3'
miRNA:   3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5'
30140 3' -56.5 NC_006273.1 + 164439 0.66 0.939278
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 31667 0.66 0.931101
Target:  5'- uGCGUCGUCAaggacggcGUGuuGgacGCUguGUGGCg -3'
miRNA:   3'- -UGUAGUAGU--------CGCggCa--CGAguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 191528 0.66 0.94509
Target:  5'- gUAUCgGUCGGCGgCGaucaggGCUaCGGUGGCa -3'
miRNA:   3'- uGUAG-UAGUCGCgGCa-----CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 148788 0.66 0.948893
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 233710 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 230384 0.66 0.931101
Target:  5'- aACG-CGUCAGC-CCGcGCUCGGCaGaGCu -3'
miRNA:   3'- -UGUaGUAGUCGcGGCaCGAGUCG-C-CG- -5'
30140 3' -56.5 NC_006273.1 + 92597 0.66 0.93599
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 34236 0.66 0.925984
Target:  5'- cGCggCA-CAGgGCCGccgGCaggCAGCGGCc -3'
miRNA:   3'- -UGuaGUaGUCgCGGCa--CGa--GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 198092 0.66 0.940197
Target:  5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 175066 0.66 0.948064
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 156861 0.66 0.925984
Target:  5'- uACGUCcugaCGGCGCCcgGUGUccgGGCGGCg -3'
miRNA:   3'- -UGUAGua--GUCGCGG--CACGag-UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 212133 0.67 0.897004
Target:  5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3'
miRNA:   3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.