miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 147963 0.67 0.897004
Target:  5'- aGCAgcg-UAGCGCCGUGUU-GGCGcGCg -3'
miRNA:   3'- -UGUaguaGUCGCGGCACGAgUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 211765 0.67 0.897004
Target:  5'- -aAUgGUgAGCagGCCcggGCUCGGCGGCg -3'
miRNA:   3'- ugUAgUAgUCG--CGGca-CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 228452 0.67 0.897004
Target:  5'- cAUGUUAcuUCGGCaacGUCGacggGCUCGGCGGCu -3'
miRNA:   3'- -UGUAGU--AGUCG---CGGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 133470 0.67 0.897638
Target:  5'- -aGUCA-CGGCGgCGUGCaggcgcggacgcuggCGGCGGCc -3'
miRNA:   3'- ugUAGUaGUCGCgGCACGa--------------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 41996 0.67 0.915068
Target:  5'- uCAUCGUCGuCGUCGUcCUCAuCGGCa -3'
miRNA:   3'- uGUAGUAGUcGCGGCAcGAGUcGCCG- -5'
30140 3' -56.5 NC_006273.1 + 233668 0.67 0.90927
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 167895 0.67 0.90927
Target:  5'- aACAUgacCAUCGcCGCCaacGCUCAGCGGg -3'
miRNA:   3'- -UGUA---GUAGUcGCGGca-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 194820 0.67 0.902634
Target:  5'- gGCAgcgcgCAgaaAGCGCCGUGgaCagcaagccgcagaAGCGGCg -3'
miRNA:   3'- -UGUa----GUag-UCGCGGCACgaG-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 165285 0.67 0.899528
Target:  5'- cCGUCAUCcagcgcGGCGCUGUGUccgagcucaacagcgUCAGCagGGCc -3'
miRNA:   3'- uGUAGUAG------UCGCGGCACG---------------AGUCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 65788 0.68 0.865507
Target:  5'- cCGUCaAUCAGCGCuCGUgucugcgucGCcccugcgguccgcaaUCGGCGGCg -3'
miRNA:   3'- uGUAG-UAGUCGCG-GCA---------CG---------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 128390 0.68 0.85506
Target:  5'- -aGUCGgaUCA-CGuCCaUGCUCAGCGGCg -3'
miRNA:   3'- ugUAGU--AGUcGC-GGcACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 53839 0.68 0.876966
Target:  5'- uACAUCGauaCAGUGCCGUGa-CAGCcguGGCc -3'
miRNA:   3'- -UGUAGUa--GUCGCGGCACgaGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 208481 0.68 0.852772
Target:  5'- aGCAUCAggAGUGUgGUGUgauagaugagugucUCGGUGGCg -3'
miRNA:   3'- -UGUAGUagUCGCGgCACG--------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 166942 0.68 0.85506
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5'
30140 3' -56.5 NC_006273.1 + 5067 0.68 0.85506
Target:  5'- uGCaAUUAUCAGCGUcaccacugaCGUGCUaggaccGCGGCa -3'
miRNA:   3'- -UG-UAGUAGUCGCG---------GCACGAgu----CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 675 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 36471 0.68 0.869866
Target:  5'- -uGUCcUCGGCGCCcucaauuucGCcCAGCGGCa -3'
miRNA:   3'- ugUAGuAGUCGCGGca-------CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 131123 0.68 0.862562
Target:  5'- gGCAUCucuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 195568 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 176453 0.68 0.883859
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.