miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 33320 0.68 0.883859
Target:  5'- gGCGUcCGagAGCGCCGaGCUgAacuGCGGCa -3'
miRNA:   3'- -UGUA-GUagUCGCGGCaCGAgU---CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 74619 0.68 0.877665
Target:  5'- -gGUCGcgCAGuCGCCGUGCacguacuugaggaaGGCGGCg -3'
miRNA:   3'- ugUAGUa-GUC-GCGGCACGag------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 112564 0.68 0.876966
Target:  5'- cGCGUCAgCGGcCGCCgGUGCUUcuucuaccuGGCuGGCg -3'
miRNA:   3'- -UGUAGUaGUC-GCGG-CACGAG---------UCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 187335 0.68 0.876966
Target:  5'- gACGUCGgucagCGGCGCCGUcaccgccauGUcCGGCGGa -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCA---------CGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 132187 0.68 0.876966
Target:  5'- gACGUUGUUu-CGaUUGUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAGUAGucGC-GGCACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 23348 0.68 0.876966
Target:  5'- -gAUCcccCAGCGaCUGUG-UCAGCGGCu -3'
miRNA:   3'- ugUAGua-GUCGC-GGCACgAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 131123 0.68 0.862562
Target:  5'- gGCAUCucuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 98631 0.68 0.862562
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 188976 0.68 0.869866
Target:  5'- --uUgGUgGGCGgCGUGCUCAgguucuuacGCGGCg -3'
miRNA:   3'- uguAgUAgUCGCgGCACGAGU---------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 179427 0.68 0.883859
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 118606 0.68 0.876966
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 53839 0.68 0.876966
Target:  5'- uACAUCGauaCAGUGCCGUGa-CAGCcguGGCc -3'
miRNA:   3'- -UGUAGUa--GUCGCGGCACgaGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 134113 0.69 0.839487
Target:  5'- -gAUCAUguGCGCCGcGCacUCGGCgauGGCu -3'
miRNA:   3'- ugUAGUAguCGCGGCaCG--AGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 147419 0.69 0.847367
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
30140 3' -56.5 NC_006273.1 + 105489 0.69 0.847367
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 140175 0.69 0.847367
Target:  5'- -gGUCcgaGGCGCCGaccccgGCUgGGCGGCc -3'
miRNA:   3'- ugUAGuagUCGCGGCa-----CGAgUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 86444 0.69 0.839487
Target:  5'- uGCA-CGgugaaagUAGCGUCGUcGCUCGGCGGg -3'
miRNA:   3'- -UGUaGUa------GUCGCGGCA-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 124983 0.69 0.839487
Target:  5'- cGCAUCAacgUCAGCGUCauauUGCgCAGCaGGCc -3'
miRNA:   3'- -UGUAGU---AGUCGCGGc---ACGaGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 38077 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 17077 0.69 0.823196
Target:  5'- cCAUCuggcaGGCGCgCGUGgUCcGCGGCg -3'
miRNA:   3'- uGUAGuag--UCGCG-GCACgAGuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.