miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 161669 0.72 0.694229
Target:  5'- gACGggGUCGGCGCUcUGCcggcugCGGCGGCa -3'
miRNA:   3'- -UGUagUAGUCGCGGcACGa-----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 144308 0.72 0.64461
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 201133 0.71 0.723473
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 743 0.71 0.704038
Target:  5'- gGCGUCcUCAGCGCguuugcggCGUGCUguGUccGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCG--------GCACGAguCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 111334 0.71 0.713789
Target:  5'- gGCcgCAUagcgcggccGCGCCGcuggGUUCAGCGGCg -3'
miRNA:   3'- -UGuaGUAgu-------CGCGGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 81764 0.71 0.713789
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 40681 0.71 0.704038
Target:  5'- gGCGUCcUCAGCGCguuugcggCGUGCUguGUccGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCG--------GCACGAguCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 114507 0.71 0.713789
Target:  5'- aGCAUCcUCGGCGacggCGUGCaCGGCGGg -3'
miRNA:   3'- -UGUAGuAGUCGCg---GCACGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 138686 0.7 0.797539
Target:  5'- aACuggCAaaaAGCGCCGUGCUCuuggcgccGCGGUg -3'
miRNA:   3'- -UGua-GUag-UCGCGGCACGAGu-------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 14057 0.7 0.768767
Target:  5'- aACGUCucuccgguaacuAUCGGCgGCCGgggcugugaaccGCUCAGUGGCu -3'
miRNA:   3'- -UGUAG------------UAGUCG-CGGCa-----------CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 131116 0.7 0.751105
Target:  5'- uGCAgCGUUAcGCGCCGUGUcgucguaagcucaUCGGCGGg -3'
miRNA:   3'- -UGUaGUAGU-CGCGGCACG-------------AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 69436 0.7 0.752044
Target:  5'- gGCAUgG-CGGCGCCGcUGU--AGCGGCg -3'
miRNA:   3'- -UGUAgUaGUCGCGGC-ACGagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 228315 0.7 0.770603
Target:  5'- aAUAUCAUCugguggaccGGCaUCGUGCUUcuGGCGGCg -3'
miRNA:   3'- -UGUAGUAG---------UCGcGGCACGAG--UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 35876 0.7 0.77971
Target:  5'- -uGUCGccCAGCaugauGCCGUGCagCGGCGGCc -3'
miRNA:   3'- ugUAGUa-GUCG-----CGGCACGa-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 48790 0.7 0.788692
Target:  5'- cACGUCAUCGGUGCacagcgacaGUGCUgGGCuGUc -3'
miRNA:   3'- -UGUAGUAGUCGCGg--------CACGAgUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 144399 0.7 0.787799
Target:  5'- --uUCGUCAGCgGCUGUcugcccgGCgccgCGGCGGCg -3'
miRNA:   3'- uguAGUAGUCG-CGGCA-------CGa---GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 134113 0.69 0.839487
Target:  5'- -gAUCAUguGCGCCGcGCacUCGGCgauGGCu -3'
miRNA:   3'- ugUAGUAguCGCGGCaCG--AGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 124983 0.69 0.839487
Target:  5'- cGCAUCAacgUCAGCGUCauauUGCgCAGCaGGCc -3'
miRNA:   3'- -UGUAGU---AGUCGCGGc---ACGaGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 55040 0.69 0.831428
Target:  5'- cGCGgagCAUCGGCGUgG-GCUCcaugucGGUGGCa -3'
miRNA:   3'- -UGUa--GUAGUCGCGgCaCGAG------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 42706 0.69 0.806244
Target:  5'- gGCGUUgacCAGCGCCGUGUU-GGCGuGCc -3'
miRNA:   3'- -UGUAGua-GUCGCGGCACGAgUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.