miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 134113 0.69 0.839487
Target:  5'- -gAUCAUguGCGCCGcGCacUCGGCgauGGCu -3'
miRNA:   3'- ugUAGUAguCGCGGCaCG--AGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 17077 0.69 0.823196
Target:  5'- cCAUCuggcaGGCGCgCGUGgUCcGCGGCg -3'
miRNA:   3'- uGUAGuag--UCGCG-GCACgAGuCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 221026 0.69 0.831428
Target:  5'- cACAgg--CAGCGCgGggaGCUcCGGCGGCa -3'
miRNA:   3'- -UGUaguaGUCGCGgCa--CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 124414 0.69 0.831428
Target:  5'- uCGUCGUCgGGCGacaCGUGCU--GCGGCc -3'
miRNA:   3'- uGUAGUAG-UCGCg--GCACGAguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 232970 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 80381 0.69 0.823196
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 196779 0.69 0.823196
Target:  5'- uGCGUCGgcaccugaacCAGCGuCUGUGCUgCGGCuGGCu -3'
miRNA:   3'- -UGUAGUa---------GUCGC-GGCACGA-GUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 38077 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 42706 0.69 0.806244
Target:  5'- gGCGUUgacCAGCGCCGUGUU-GGCGuGCc -3'
miRNA:   3'- -UGUAGua-GUCGCGGCACGAgUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 140175 0.69 0.847367
Target:  5'- -gGUCcgaGGCGCCGaccccgGCUgGGCGGCc -3'
miRNA:   3'- ugUAGuagUCGCGGCa-----CGAgUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155621 0.69 0.831428
Target:  5'- -aAUCA-CGGCGCCGgugGUaCuGCGGCg -3'
miRNA:   3'- ugUAGUaGUCGCGGCa--CGaGuCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 86444 0.69 0.839487
Target:  5'- uGCA-CGgugaaagUAGCGUCGUcGCUCGGCGGg -3'
miRNA:   3'- -UGUaGUa------GUCGCGGCA-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 105489 0.69 0.847367
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 65788 0.68 0.865507
Target:  5'- cCGUCaAUCAGCGCuCGUgucugcgucGCcccugcgguccgcaaUCGGCGGCg -3'
miRNA:   3'- uGUAG-UAGUCGCG-GCA---------CG---------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 33320 0.68 0.883859
Target:  5'- gGCGUcCGagAGCGCCGaGCUgAacuGCGGCa -3'
miRNA:   3'- -UGUA-GUagUCGCGGCaCGAgU---CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 36471 0.68 0.869866
Target:  5'- -uGUCcUCGGCGCCcucaauuucGCcCAGCGGCa -3'
miRNA:   3'- ugUAGuAGUCGCGGca-------CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 208481 0.68 0.852772
Target:  5'- aGCAUCAggAGUGUgGUGUgauagaugagugucUCGGUGGCg -3'
miRNA:   3'- -UGUAGUagUCGCGgCACG--------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 128390 0.68 0.85506
Target:  5'- -aGUCGgaUCA-CGuCCaUGCUCAGCGGCg -3'
miRNA:   3'- ugUAGU--AGUcGC-GGcACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 195568 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 126855 0.68 0.862562
Target:  5'- uGCAgCAgCGGCGUaUGUGCgUCGGUGGCg -3'
miRNA:   3'- -UGUaGUaGUCGCG-GCACG-AGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.