miRNA display CGI


Results 61 - 80 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 5067 0.68 0.85506
Target:  5'- uGCaAUUAUCAGCGUcaccacugaCGUGCUaggaccGCGGCa -3'
miRNA:   3'- -UG-UAGUAGUCGCG---------GCACGAgu----CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 65788 0.68 0.865507
Target:  5'- cCGUCaAUCAGCGCuCGUgucugcgucGCcccugcgguccgcaaUCGGCGGCg -3'
miRNA:   3'- uGUAG-UAGUCGCG-GCA---------CG---------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 126855 0.68 0.862562
Target:  5'- uGCAgCAgCGGCGUaUGUGCgUCGGUGGCg -3'
miRNA:   3'- -UGUaGUaGUCGCG-GCACG-AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 33320 0.68 0.883859
Target:  5'- gGCGUcCGagAGCGCCGaGCUgAacuGCGGCa -3'
miRNA:   3'- -UGUA-GUagUCGCGGCaCGAgU---CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 74619 0.68 0.877665
Target:  5'- -gGUCGcgCAGuCGCCGUGCacguacuugaggaaGGCGGCg -3'
miRNA:   3'- ugUAGUa-GUC-GCGGCACGag------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 187335 0.68 0.876966
Target:  5'- gACGUCGgucagCGGCGCCGUcaccgccauGUcCGGCGGa -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCA---------CGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 132187 0.68 0.876966
Target:  5'- gACGUUGUUu-CGaUUGUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAGUAGucGC-GGCACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 23348 0.68 0.876966
Target:  5'- -gAUCcccCAGCGaCUGUG-UCAGCGGCu -3'
miRNA:   3'- ugUAGua-GUCGC-GGCACgAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 675 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 131123 0.68 0.862562
Target:  5'- gGCAUCucuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 174114 0.68 0.869866
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 179427 0.68 0.883859
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 176453 0.68 0.883859
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 118606 0.68 0.876966
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 53839 0.68 0.876966
Target:  5'- uACAUCGauaCAGUGCCGUGa-CAGCcguGGCc -3'
miRNA:   3'- -UGUAGUa--GUCGCGGCACgaGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 98631 0.68 0.862562
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 123503 0.67 0.89054
Target:  5'- uACGUCGUagCGGUaGCCGUuucagCAGCGGCg -3'
miRNA:   3'- -UGUAGUA--GUCG-CGGCAcga--GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 170048 0.67 0.920093
Target:  5'- uACAUCccaucucguAUCAGCaGCCGUaGCguggcauugauggUCAGCGGg -3'
miRNA:   3'- -UGUAG---------UAGUCG-CGGCA-CG-------------AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 165285 0.67 0.899528
Target:  5'- cCGUCAUCcagcgcGGCGCUGUGUccgagcucaacagcgUCAGCagGGCc -3'
miRNA:   3'- uGUAGUAG------UCGCGGCACG---------------AGUCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 101553 0.67 0.92064
Target:  5'- gACAga---AGCGCCGUGCgcgacgggcGCGGCg -3'
miRNA:   3'- -UGUaguagUCGCGGCACGagu------CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.