miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 25482 0.67 0.92064
Target:  5'- cGCGUUGUUgAGCGCCuucUGCUacGCGGCg -3'
miRNA:   3'- -UGUAGUAG-UCGCGGc--ACGAguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 170048 0.67 0.920093
Target:  5'- uACAUCccaucucguAUCAGCaGCCGUaGCguggcauugauggUCAGCGGg -3'
miRNA:   3'- -UGUAG---------UAGUCG-CGGCA-CG-------------AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 188566 0.67 0.915068
Target:  5'- uACAUCGUCGGCGCCcagGUGCacgcugauguccUCGGgcuuaacgcCGGUu -3'
miRNA:   3'- -UGUAGUAGUCGCGG---CACG------------AGUC---------GCCG- -5'
30140 3' -56.5 NC_006273.1 + 41996 0.67 0.915068
Target:  5'- uCAUCGUCGuCGUCGUcCUCAuCGGCa -3'
miRNA:   3'- uGUAGUAGUcGCGGCAcGAGUcGCCG- -5'
30140 3' -56.5 NC_006273.1 + 121024 0.67 0.915068
Target:  5'- gACGUCGUCGuCGCC---CUgGGCGGCa -3'
miRNA:   3'- -UGUAGUAGUcGCGGcacGAgUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 38397 0.67 0.915068
Target:  5'- cCGUcCGUCGcCGCCGcUGCggUGGCGGCa -3'
miRNA:   3'- uGUA-GUAGUcGCGGC-ACGa-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 38776 0.67 0.90927
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 167895 0.67 0.90927
Target:  5'- aACAUgacCAUCGcCGCCaacGCUCAGCGGg -3'
miRNA:   3'- -UGUA---GUAGUcGCGGca-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 120505 0.67 0.90927
Target:  5'- -aGUCGUCcuaAGCG-CGUGCgCGGCGGg -3'
miRNA:   3'- ugUAGUAG---UCGCgGCACGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 233668 0.67 0.90927
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 45825 0.67 0.905684
Target:  5'- -gAUCAugguguggcuguggcUCGGCGUCGgGCUCcucGGCGGUa -3'
miRNA:   3'- ugUAGU---------------AGUCGCGGCaCGAG---UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 145022 0.67 0.903248
Target:  5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3'
miRNA:   3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 194820 0.67 0.902634
Target:  5'- gGCAgcgcgCAgaaAGCGCCGUGgaCagcaagccgcagaAGCGGCg -3'
miRNA:   3'- -UGUa----GUag-UCGCGGCACgaG-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 234758 0.67 0.902634
Target:  5'- gGCAgcgcgCAgaaAGCGCCGUGgaCagcaagccgcagaAGCGGCg -3'
miRNA:   3'- -UGUa----GUag-UCGCGGCACgaG-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 165285 0.67 0.899528
Target:  5'- cCGUCAUCcagcgcGGCGCUGUGUccgagcucaacagcgUCAGCagGGCc -3'
miRNA:   3'- uGUAGUAG------UCGCGGCACG---------------AGUCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 133470 0.67 0.897638
Target:  5'- -aGUCA-CGGCGgCGUGCaggcgcggacgcuggCGGCGGCc -3'
miRNA:   3'- ugUAGUaGUCGCgGCACGa--------------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 228452 0.67 0.897004
Target:  5'- cAUGUUAcuUCGGCaacGUCGacggGCUCGGCGGCu -3'
miRNA:   3'- -UGUAGU--AGUCG---CGGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 211765 0.67 0.897004
Target:  5'- -aAUgGUgAGCagGCCcggGCUCGGCGGCg -3'
miRNA:   3'- ugUAgUAgUCG--CGGca-CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 168609 0.67 0.897004
Target:  5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3'
miRNA:   3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 212133 0.67 0.897004
Target:  5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3'
miRNA:   3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.