miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 38776 0.67 0.90927
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 38818 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 40681 0.71 0.704038
Target:  5'- gGCGUCcUCAGCGCguuugcggCGUGCUguGUccGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCG--------GCACGAguCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 41996 0.67 0.915068
Target:  5'- uCAUCGUCGuCGUCGUcCUCAuCGGCa -3'
miRNA:   3'- uGUAGUAGUcGCGGCAcGAGUcGCCG- -5'
30140 3' -56.5 NC_006273.1 + 42147 0.66 0.931101
Target:  5'- aACAUCAaCGGCagcauuaacgccGCCGccGC-CAGCGGUa -3'
miRNA:   3'- -UGUAGUaGUCG------------CGGCa-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 42706 0.69 0.806244
Target:  5'- gGCGUUgacCAGCGCCGUGUU-GGCGuGCc -3'
miRNA:   3'- -UGUAGua-GUCGCGGCACGAgUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 45825 0.67 0.905684
Target:  5'- -gAUCAugguguggcuguggcUCGGCGUCGgGCUCcucGGCGGUa -3'
miRNA:   3'- ugUAGU---------------AGUCGCGGCaCGAG---UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 47680 0.72 0.694229
Target:  5'- cCAUCAUCGGCGUgaugcuCGUGCUgAucGUGGCc -3'
miRNA:   3'- uGUAGUAGUCGCG------GCACGAgU--CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 48790 0.7 0.788692
Target:  5'- cACGUCAUCGGUGCacagcgacaGUGCUgGGCuGUc -3'
miRNA:   3'- -UGUAGUAGUCGCGg--------CACGAgUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 51602 0.66 0.940197
Target:  5'- aGCGggGUCuucuuccgacacgGGCGaCGgcagGCUCGGCGGCg -3'
miRNA:   3'- -UGUagUAG-------------UCGCgGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 53839 0.68 0.876966
Target:  5'- uACAUCGauaCAGUGCCGUGa-CAGCcguGGCc -3'
miRNA:   3'- -UGUAGUa--GUCGCGGCACgaGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 55040 0.69 0.831428
Target:  5'- cGCGgagCAUCGGCGUgG-GCUCcaugucGGUGGCa -3'
miRNA:   3'- -UGUa--GUAGUCGCGgCaCGAG------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 57690 0.72 0.664541
Target:  5'- gGCuUCAgccgCAGCGCCa-GCgUCGGCGGCu -3'
miRNA:   3'- -UGuAGUa---GUCGCGGcaCG-AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 58555 0.66 0.93599
Target:  5'- aACcgCAUgAGCGCCGUGUgcaAGCcaGCc -3'
miRNA:   3'- -UGuaGUAgUCGCGGCACGag-UCGc-CG- -5'
30140 3' -56.5 NC_006273.1 + 65788 0.68 0.865507
Target:  5'- cCGUCaAUCAGCGCuCGUgucugcgucGCcccugcgguccgcaaUCGGCGGCg -3'
miRNA:   3'- uGUAG-UAGUCGCG-GCA---------CG---------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 69436 0.7 0.752044
Target:  5'- gGCAUgG-CGGCGCCGcUGU--AGCGGCg -3'
miRNA:   3'- -UGUAgUaGUCGCGGC-ACGagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 72460 0.66 0.925984
Target:  5'- cGCAcCGUCGGUGCCGgcgGCcacguccgUCA-CGGCg -3'
miRNA:   3'- -UGUaGUAGUCGCGGCa--CG--------AGUcGCCG- -5'
30140 3' -56.5 NC_006273.1 + 73765 0.67 0.897004
Target:  5'- gGCAg---CGGCGCC--GC-CAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCGCGGcaCGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 74619 0.68 0.877665
Target:  5'- -gGUCGcgCAGuCGCCGUGCacguacuugaggaaGGCGGCg -3'
miRNA:   3'- ugUAGUa-GUC-GCGGCACGag------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 80381 0.69 0.823196
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.