miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 81764 0.71 0.713789
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 86444 0.69 0.839487
Target:  5'- uGCA-CGgugaaagUAGCGUCGUcGCUCGGCGGg -3'
miRNA:   3'- -UGUaGUa------GUCGCGGCA-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 90299 0.79 0.30157
Target:  5'- -gGUgAUCAGCGCCGccGC-CAGCGGCg -3'
miRNA:   3'- ugUAgUAGUCGCGGCa-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 91226 0.72 0.684372
Target:  5'- gGCgAUC-UCGGCGCgCGagGCuUCGGCGGCg -3'
miRNA:   3'- -UG-UAGuAGUCGCG-GCa-CG-AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 92597 0.66 0.93599
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 98631 0.68 0.862562
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 99314 0.67 0.89054
Target:  5'- gGCGUCGUCGgaggccgguGCGUCGUccucaucuccGCUCGgaacGCGGCc -3'
miRNA:   3'- -UGUAGUAGU---------CGCGGCA----------CGAGU----CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 100452 0.74 0.535825
Target:  5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3'
miRNA:   3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 101553 0.67 0.92064
Target:  5'- gACAga---AGCGCCGUGCgcgacgggcGCGGCg -3'
miRNA:   3'- -UGUaguagUCGCGGCACGagu------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 101719 0.78 0.375529
Target:  5'- -gGUCAcCGGCGCCGUggaaagugagGCUCAGaCGGCg -3'
miRNA:   3'- ugUAGUaGUCGCGGCA----------CGAGUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 102874 0.75 0.526186
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 104500 0.67 0.896367
Target:  5'- aACGUCGaacgcgaUCGGCgGCCG-GgUCGcGCGGCa -3'
miRNA:   3'- -UGUAGU-------AGUCG-CGGCaCgAGU-CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 104576 0.72 0.654584
Target:  5'- aGCGUCAUCGucGCGCCG-GCacgaugCAGCuGGCc -3'
miRNA:   3'- -UGUAGUAGU--CGCGGCaCGa-----GUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 105489 0.69 0.847367
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 106217 0.66 0.94509
Target:  5'- cACGUaca-GGUGCCGcgggugGC-CAGCGGCg -3'
miRNA:   3'- -UGUAguagUCGCGGCa-----CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 106804 0.66 0.934547
Target:  5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3'
miRNA:   3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5'
30140 3' -56.5 NC_006273.1 + 111334 0.71 0.713789
Target:  5'- gGCcgCAUagcgcggccGCGCCGcuggGUUCAGCGGCg -3'
miRNA:   3'- -UGuaGUAgu-------CGCGGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 112070 0.66 0.942455
Target:  5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3'
miRNA:   3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 112564 0.68 0.876966
Target:  5'- cGCGUCAgCGGcCGCCgGUGCUUcuucuaccuGGCuGGCg -3'
miRNA:   3'- -UGUAGUaGUC-GCGG-CACGAG---------UCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 113717 0.75 0.526186
Target:  5'- cACGUCGcgaggaCAGCGCCGgaggugGCgacggCGGCGGCg -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCa-----CGa----GUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.