miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 114507 0.71 0.713789
Target:  5'- aGCAUCcUCGGCGacggCGUGCaCGGCGGg -3'
miRNA:   3'- -UGUAGuAGUCGCg---GCACGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 117554 0.66 0.949305
Target:  5'- cCGUCAUguauccCGGCGCCGU----AGCGGCc -3'
miRNA:   3'- uGUAGUA------GUCGCGGCAcgagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 118606 0.68 0.876966
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 119294 0.66 0.940653
Target:  5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3'
miRNA:   3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 120505 0.67 0.90927
Target:  5'- -aGUCGUCcuaAGCG-CGUGCgCGGCGGg -3'
miRNA:   3'- ugUAGUAG---UCGCgGCACGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 121024 0.67 0.915068
Target:  5'- gACGUCGUCGuCGCC---CUgGGCGGCa -3'
miRNA:   3'- -UGUAGUAGUcGCGGcacGAgUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 123503 0.67 0.89054
Target:  5'- uACGUCGUagCGGUaGCCGUuucagCAGCGGCg -3'
miRNA:   3'- -UGUAGUA--GUCG-CGGCAcga--GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 124116 0.67 0.896367
Target:  5'- gGCGUCGacagagcUCGGCGuuGg---CGGCGGCa -3'
miRNA:   3'- -UGUAGU-------AGUCGCggCacgaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 124414 0.69 0.831428
Target:  5'- uCGUCGUCgGGCGacaCGUGCU--GCGGCc -3'
miRNA:   3'- uGUAGUAG-UCGCg--GCACGAguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 124983 0.69 0.839487
Target:  5'- cGCAUCAacgUCAGCGUCauauUGCgCAGCaGGCc -3'
miRNA:   3'- -UGUAGU---AGUCGCGGc---ACGaGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 126855 0.68 0.862562
Target:  5'- uGCAgCAgCGGCGUaUGUGCgUCGGUGGCg -3'
miRNA:   3'- -UGUaGUaGUCGCG-GCACG-AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 128390 0.68 0.85506
Target:  5'- -aGUCGgaUCA-CGuCCaUGCUCAGCGGCg -3'
miRNA:   3'- ugUAGU--AGUcGC-GGcACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 130283 0.66 0.931101
Target:  5'- uGCGUCcgCAaGCGCCGUGCgCGuUGGa -3'
miRNA:   3'- -UGUAGuaGU-CGCGGCACGaGUcGCCg -5'
30140 3' -56.5 NC_006273.1 + 131116 0.7 0.751105
Target:  5'- uGCAgCGUUAcGCGCCGUGUcgucguaagcucaUCGGCGGg -3'
miRNA:   3'- -UGUaGUAGU-CGCGGCACG-------------AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 131123 0.68 0.862562
Target:  5'- gGCAUCucuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 132187 0.68 0.876966
Target:  5'- gACGUUGUUu-CGaUUGUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAGUAGucGC-GGCACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 133470 0.67 0.897638
Target:  5'- -aGUCA-CGGCGgCGUGCaggcgcggacgcuggCGGCGGCc -3'
miRNA:   3'- ugUAGUaGUCGCgGCACGa--------------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 134113 0.69 0.839487
Target:  5'- -gAUCAUguGCGCCGcGCacUCGGCgauGGCu -3'
miRNA:   3'- ugUAGUAguCGCGGCaCG--AGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 135567 1.12 0.002496
Target:  5'- aACAUCAUCAGCGCCGUGCUCAGCGGCg -3'
miRNA:   3'- -UGUAGUAGUCGCGGCACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 138686 0.7 0.797539
Target:  5'- aACuggCAaaaAGCGCCGUGCUCuuggcgccGCGGUg -3'
miRNA:   3'- -UGua-GUag-UCGCGGCACGAGu-------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.