miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 234758 0.67 0.902634
Target:  5'- gGCAgcgcgCAgaaAGCGCCGUGgaCagcaagccgcagaAGCGGCg -3'
miRNA:   3'- -UGUa----GUag-UCGCGGCACgaG-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 233710 0.66 0.925984
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 233668 0.67 0.90927
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 233179 0.66 0.93599
Target:  5'- cGCGUCGUgccCAGCGCCauGUGCgggUCGuuuCGGCg -3'
miRNA:   3'- -UGUAGUA---GUCGCGG--CACG---AGUc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 232970 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 230384 0.66 0.931101
Target:  5'- aACG-CGUCAGC-CCGcGCUCGGCaGaGCu -3'
miRNA:   3'- -UGUaGUAGUCGcGGCaCGAGUCG-C-CG- -5'
30140 3' -56.5 NC_006273.1 + 228452 0.67 0.897004
Target:  5'- cAUGUUAcuUCGGCaacGUCGacggGCUCGGCGGCu -3'
miRNA:   3'- -UGUAGU--AGUCG---CGGCa---CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 228315 0.7 0.770603
Target:  5'- aAUAUCAUCugguggaccGGCaUCGUGCUUcuGGCGGCg -3'
miRNA:   3'- -UGUAGUAG---------UCGcGGCACGAG--UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 221026 0.69 0.831428
Target:  5'- cACAgg--CAGCGCgGggaGCUcCGGCGGCa -3'
miRNA:   3'- -UGUaguaGUCGCGgCa--CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217971 0.66 0.949305
Target:  5'- uCGUCGUCAuCGCucuCGUgGC-CGGCGGCc -3'
miRNA:   3'- uGUAGUAGUcGCG---GCA-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217898 0.66 0.946803
Target:  5'- cACAUUGUaugugaaguggCAGUGUCGUGUUgugcuucaacguuacCGGCGGCg -3'
miRNA:   3'- -UGUAGUA-----------GUCGCGGCACGA---------------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 217545 0.66 0.940653
Target:  5'- aGCGcUCGUC-GCGCUgucgggauagGUGCcccaggcuUCGGCGGCg -3'
miRNA:   3'- -UGU-AGUAGuCGCGG----------CACG--------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 215540 0.66 0.947645
Target:  5'- gACAgCGUCAGaCGCacgcuggaaaagaGUGCUCcagccgguGCGGCa -3'
miRNA:   3'- -UGUaGUAGUC-GCGg------------CACGAGu-------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 215028 0.66 0.93599
Target:  5'- cCGUCGUCugagcagugugGGCGCUGccggGCUCGGaaGGCa -3'
miRNA:   3'- uGUAGUAG-----------UCGCGGCa---CGAGUCg-CCG- -5'
30140 3' -56.5 NC_006273.1 + 213724 0.73 0.634627
Target:  5'- cACGUCGgccacCAGCGCCGUGguCUCGGUcgccaGGCu -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCAC--GAGUCG-----CCG- -5'
30140 3' -56.5 NC_006273.1 + 212133 0.67 0.897004
Target:  5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3'
miRNA:   3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 211765 0.67 0.897004
Target:  5'- -aAUgGUgAGCagGCCcggGCUCGGCGGCg -3'
miRNA:   3'- ugUAgUAgUCG--CGGca-CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 208481 0.68 0.852772
Target:  5'- aGCAUCAggAGUGUgGUGUgauagaugagugucUCGGUGGCg -3'
miRNA:   3'- -UGUAGUagUCGCGgCACG--------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 201133 0.71 0.723473
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 198092 0.66 0.940197
Target:  5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.