miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 196779 0.69 0.823196
Target:  5'- uGCGUCGgcaccugaacCAGCGuCUGUGCUgCGGCuGGCu -3'
miRNA:   3'- -UGUAGUa---------GUCGC-GGCACGA-GUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 196096 0.73 0.614662
Target:  5'- ---cCAUgGGCGCCGUGUggCGcGCGGCg -3'
miRNA:   3'- uguaGUAgUCGCGGCACGa-GU-CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 195568 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 194820 0.67 0.902634
Target:  5'- gGCAgcgcgCAgaaAGCGCCGUGgaCagcaagccgcagaAGCGGCg -3'
miRNA:   3'- -UGUa----GUag-UCGCGGCACgaG-------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 193149 0.66 0.93599
Target:  5'- cACGUgugCGGCcuGCUGUGCUCuGCGGa -3'
miRNA:   3'- -UGUAguaGUCG--CGGCACGAGuCGCCg -5'
30140 3' -56.5 NC_006273.1 + 191528 0.66 0.94509
Target:  5'- gUAUCgGUCGGCGgCGaucaggGCUaCGGUGGCa -3'
miRNA:   3'- uGUAG-UAGUCGCgGCa-----CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 188976 0.68 0.869866
Target:  5'- --uUgGUgGGCGgCGUGCUCAgguucuuacGCGGCg -3'
miRNA:   3'- uguAgUAgUCGCgGCACGAGU---------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 188566 0.67 0.915068
Target:  5'- uACAUCGUCGGCGCCcagGUGCacgcugauguccUCGGgcuuaacgcCGGUu -3'
miRNA:   3'- -UGUAGUAGUCGCGG---CACG------------AGUC---------GCCG- -5'
30140 3' -56.5 NC_006273.1 + 187335 0.68 0.876966
Target:  5'- gACGUCGgucagCGGCGCCGUcaccgccauGUcCGGCGGa -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCA---------CGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 186046 0.74 0.535825
Target:  5'- aACAUCuuUCAGCGUCGUccGCgcgGGCGGCa -3'
miRNA:   3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 180044 0.67 0.897004
Target:  5'- aACGagAgCGGCGCCGUcUUCGGCGuGCa -3'
miRNA:   3'- -UGUagUaGUCGCGGCAcGAGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 179427 0.68 0.883859
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 176453 0.68 0.883859
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 175066 0.66 0.948064
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 174114 0.68 0.869866
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 171207 0.66 0.931101
Target:  5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3'
miRNA:   3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 170048 0.67 0.920093
Target:  5'- uACAUCccaucucguAUCAGCaGCCGUaGCguggcauugauggUCAGCGGg -3'
miRNA:   3'- -UGUAG---------UAGUCG-CGGCA-CG-------------AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 169725 0.66 0.94509
Target:  5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3'
miRNA:   3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 168953 0.73 0.604694
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 168609 0.67 0.897004
Target:  5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3'
miRNA:   3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.