miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 167895 0.67 0.90927
Target:  5'- aACAUgacCAUCGcCGCCaacGCUCAGCGGg -3'
miRNA:   3'- -UGUA---GUAGUcGCGGca-CGAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 167016 0.79 0.308434
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 166942 0.68 0.85506
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5'
30140 3' -56.5 NC_006273.1 + 166150 0.66 0.925984
Target:  5'- cGCAUgAUCAGCGCggggucggucuCGUGUgUUGGCGGa -3'
miRNA:   3'- -UGUAgUAGUCGCG-----------GCACG-AGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 165285 0.67 0.899528
Target:  5'- cCGUCAUCcagcgcGGCGCUGUGUccgagcucaacagcgUCAGCagGGCc -3'
miRNA:   3'- uGUAGUAG------UCGCGGCACG---------------AGUCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 164439 0.66 0.939278
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 163306 0.66 0.932097
Target:  5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGuacacugcucgcucuGCGGCa -3'
miRNA:   3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 163080 0.73 0.594747
Target:  5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3'
miRNA:   3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 161669 0.72 0.694229
Target:  5'- gACGggGUCGGCGCUcUGCcggcugCGGCGGCa -3'
miRNA:   3'- -UGUagUAGUCGCGGcACGa-----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 158847 0.72 0.674473
Target:  5'- cACGUCcUCGuGCGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 157794 0.66 0.94509
Target:  5'- gACGUgCAUguGCaaccgGCCGUuCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 156861 0.66 0.925984
Target:  5'- uACGUCcugaCGGCGCCcgGUGUccgGGCGGCg -3'
miRNA:   3'- -UGUAGua--GUCGCGG--CACGag-UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155621 0.69 0.831428
Target:  5'- -aAUCA-CGGCGCCGgugGUaCuGCGGCg -3'
miRNA:   3'- ugUAGUaGUCGCGGCa--CGaGuCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155567 0.75 0.479072
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155427 0.66 0.925984
Target:  5'- cUAUCAUCucuaccGcCGCCGUGCcCGGCGacGCg -3'
miRNA:   3'- uGUAGUAGu-----C-GCGGCACGaGUCGC--CG- -5'
30140 3' -56.5 NC_006273.1 + 153967 0.66 0.931101
Target:  5'- uGCAUCAUCuGCGUCGguucGCccacgCAGaccgaGGCg -3'
miRNA:   3'- -UGUAGUAGuCGCGGCa---CGa----GUCg----CCG- -5'
30140 3' -56.5 NC_006273.1 + 148788 0.66 0.948893
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 147963 0.67 0.897004
Target:  5'- aGCAgcg-UAGCGCCGUGUU-GGCGcGCg -3'
miRNA:   3'- -UGUaguaGUCGCGGCACGAgUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 147419 0.69 0.847367
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
30140 3' -56.5 NC_006273.1 + 145022 0.67 0.903248
Target:  5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3'
miRNA:   3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.