miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 104576 0.72 0.654584
Target:  5'- aGCGUCAUCGucGCGCCG-GCacgaugCAGCuGGCc -3'
miRNA:   3'- -UGUAGUAGU--CGCGGCaCGa-----GUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 142054 0.73 0.623643
Target:  5'- cACGUCGUCucgcggcAGCGCC--GC-CAGCGGCg -3'
miRNA:   3'- -UGUAGUAG-------UCGCGGcaCGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 196096 0.73 0.614662
Target:  5'- ---cCAUgGGCGCCGUGUggCGcGCGGCg -3'
miRNA:   3'- uguaGUAgUCGCGGCACGa-GU-CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 113717 0.75 0.526186
Target:  5'- cACGUCGcgaggaCAGCGCCGgaggugGCgacggCGGCGGCg -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCa-----CGa----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 101719 0.78 0.375529
Target:  5'- -gGUCAcCGGCGCCGUggaaagugagGCUCAGaCGGCg -3'
miRNA:   3'- ugUAGUaGUCGCGGCA----------CGAGUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 144399 0.7 0.787799
Target:  5'- --uUCGUCAGCgGCUGUcugcccgGCgccgCGGCGGCg -3'
miRNA:   3'- uguAGUAGUCG-CGGCA-------CGa---GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 48790 0.7 0.788692
Target:  5'- cACGUCAUCGGUGCacagcgacaGUGCUgGGCuGUc -3'
miRNA:   3'- -UGUAGUAGUCGCGg--------CACGAgUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 126855 0.68 0.862562
Target:  5'- uGCAgCAgCGGCGUaUGUGCgUCGGUGGCg -3'
miRNA:   3'- -UGUaGUaGUCGCG-GCACG-AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 195568 0.68 0.85506
Target:  5'- uGCGUCGUCGGCuGCCGggugGUUUuccaCGGCc -3'
miRNA:   3'- -UGUAGUAGUCG-CGGCa---CGAGuc--GCCG- -5'
30140 3' -56.5 NC_006273.1 + 128390 0.68 0.85506
Target:  5'- -aGUCGgaUCA-CGuCCaUGCUCAGCGGCg -3'
miRNA:   3'- ugUAGU--AGUcGC-GGcACGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 208481 0.68 0.852772
Target:  5'- aGCAUCAggAGUGUgGUGUgauagaugagugucUCGGUGGCg -3'
miRNA:   3'- -UGUAGUagUCGCGgCACG--------------AGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 134113 0.69 0.839487
Target:  5'- -gAUCAUguGCGCCGcGCacUCGGCgauGGCu -3'
miRNA:   3'- ugUAGUAguCGCGGCaCG--AGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 124983 0.69 0.839487
Target:  5'- cGCAUCAacgUCAGCGUCauauUGCgCAGCaGGCc -3'
miRNA:   3'- -UGUAGU---AGUCGCGGc---ACGaGUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 55040 0.69 0.831428
Target:  5'- cGCGgagCAUCGGCGUgG-GCUCcaugucGGUGGCa -3'
miRNA:   3'- -UGUa--GUAGUCGCGgCaCGAG------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 221026 0.69 0.831428
Target:  5'- cACAgg--CAGCGCgGggaGCUcCGGCGGCa -3'
miRNA:   3'- -UGUaguaGUCGCGgCa--CGA-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 124414 0.69 0.831428
Target:  5'- uCGUCGUCgGGCGacaCGUGCU--GCGGCc -3'
miRNA:   3'- uGUAGUAG-UCGCg--GCACGAguCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 232970 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 196779 0.69 0.823196
Target:  5'- uGCGUCGgcaccugaacCAGCGuCUGUGCUgCGGCuGGCu -3'
miRNA:   3'- -UGUAGUa---------GUCGC-GGCACGA-GUCG-CCG- -5'
30140 3' -56.5 NC_006273.1 + 42706 0.69 0.806244
Target:  5'- gGCGUUgacCAGCGCCGUGUU-GGCGuGCc -3'
miRNA:   3'- -UGUAGua-GUCGCGGCACGAgUCGC-CG- -5'
30140 3' -56.5 NC_006273.1 + 138686 0.7 0.797539
Target:  5'- aACuggCAaaaAGCGCCGUGCUCuuggcgccGCGGUg -3'
miRNA:   3'- -UGua-GUag-UCGCGGCACGAGu-------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.