miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 90299 0.79 0.30157
Target:  5'- -gGUgAUCAGCGCCGccGC-CAGCGGCg -3'
miRNA:   3'- ugUAgUAGUCGCGGCa-CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 201133 0.71 0.723473
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 80381 0.69 0.823196
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 148788 0.66 0.948893
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 186046 0.74 0.535825
Target:  5'- aACAUCuuUCAGCGUCGUccGCgcgGGCGGCa -3'
miRNA:   3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 100452 0.74 0.535825
Target:  5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3'
miRNA:   3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 168953 0.73 0.604694
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 1203 0.73 0.614662
Target:  5'- ---cCAUgGGCGCCGUGUggCGcGCGGCg -3'
miRNA:   3'- uguaGUAgUCGCGGCACGa-GU-CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 158847 0.72 0.674473
Target:  5'- cACGUCcUCGuGCGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 114507 0.71 0.713789
Target:  5'- aGCAUCcUCGGCGacggCGUGCaCGGCGGg -3'
miRNA:   3'- -UGUAGuAGUCGCg---GCACGaGUCGCCg -5'
30140 3' -56.5 NC_006273.1 + 47680 0.72 0.694229
Target:  5'- cCAUCAUCGGCGUgaugcuCGUGCUgAucGUGGCc -3'
miRNA:   3'- uGUAGUAGUCGCG------GCACGAgU--CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 144308 0.72 0.64461
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 167016 0.79 0.308434
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 40681 0.71 0.704038
Target:  5'- gGCGUCcUCAGCGCguuugcggCGUGCUguGUccGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCG--------GCACGAguCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 155567 0.75 0.479072
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 213724 0.73 0.634627
Target:  5'- cACGUCGgccacCAGCGCCGUGguCUCGGUcgccaGGCu -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCAC--GAGUCG-----CCG- -5'
30140 3' -56.5 NC_006273.1 + 81764 0.71 0.713789
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 14057 0.7 0.768767
Target:  5'- aACGUCucuccgguaacuAUCGGCgGCCGgggcugugaaccGCUCAGUGGCu -3'
miRNA:   3'- -UGUAG------------UAGUCG-CGGCa-----------CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 102874 0.75 0.526186
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 163080 0.73 0.594747
Target:  5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3'
miRNA:   3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.