miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 3' -56.5 NC_006273.1 + 38077 0.69 0.823196
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 80381 0.69 0.823196
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 144308 0.72 0.64461
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 102874 0.75 0.526186
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 53839 0.68 0.876966
Target:  5'- uACAUCGauaCAGUGCCGUGa-CAGCcguGGCc -3'
miRNA:   3'- -UGUAGUa--GUCGCGGCACgaGUCG---CCG- -5'
30140 3' -56.5 NC_006273.1 + 147419 0.69 0.847367
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
30140 3' -56.5 NC_006273.1 + 201133 0.71 0.723473
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155567 0.75 0.479072
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 105489 0.69 0.847367
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 167016 0.79 0.308434
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
30140 3' -56.5 NC_006273.1 + 14057 0.7 0.768767
Target:  5'- aACGUCucuccgguaacuAUCGGCgGCCGgggcugugaaccGCUCAGUGGCu -3'
miRNA:   3'- -UGUAG------------UAGUCG-CGGCa-----------CGAGUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 155621 0.69 0.831428
Target:  5'- -aAUCA-CGGCGCCGgugGUaCuGCGGCg -3'
miRNA:   3'- ugUAGUaGUCGCGGCa--CGaGuCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 40681 0.71 0.704038
Target:  5'- gGCGUCcUCAGCGCguuugcggCGUGCUguGUccGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCG--------GCACGAguCG--CCG- -5'
30140 3' -56.5 NC_006273.1 + 158847 0.72 0.674473
Target:  5'- cACGUCcUCGuGCGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 168953 0.73 0.604694
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 186046 0.74 0.535825
Target:  5'- aACAUCuuUCAGCGUCGUccGCgcgGGCGGCa -3'
miRNA:   3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 99314 0.67 0.89054
Target:  5'- gGCGUCGUCGgaggccgguGCGUCGUccucaucuccGCUCGgaacGCGGCc -3'
miRNA:   3'- -UGUAGUAGU---------CGCGGCA----------CGAGU----CGCCG- -5'
30140 3' -56.5 NC_006273.1 + 118606 0.68 0.876966
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
30140 3' -56.5 NC_006273.1 + 131123 0.68 0.862562
Target:  5'- gGCAUCucuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
30140 3' -56.5 NC_006273.1 + 5067 0.68 0.85506
Target:  5'- uGCaAUUAUCAGCGUcaccacugaCGUGCUaggaccGCGGCa -3'
miRNA:   3'- -UG-UAGUAGUCGCG---------GCACGAgu----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.