miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 15670 0.66 0.915269
Target:  5'- aCUGCCUgGUGACGaCGCGUUcGUCGa- -3'
miRNA:   3'- -GAUGGAgUACUGC-GUGCGGcCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 102825 0.66 0.915269
Target:  5'- --uCgUCAUcGAaagGCGCGCCGGCCGc- -3'
miRNA:   3'- gauGgAGUA-CUg--CGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 55322 0.66 0.915269
Target:  5'- cCUGCCgcguaUCggGAUGCACGCCGaagacggcGCCGc- -3'
miRNA:   3'- -GAUGG-----AGuaCUGCGUGCGGC--------CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 169807 0.66 0.915269
Target:  5'- --cCCUCucGACGU-CGCCGGCUGUc -3'
miRNA:   3'- gauGGAGuaCUGCGuGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 188485 0.66 0.915269
Target:  5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3'
miRNA:   3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 131472 0.66 0.915269
Target:  5'- -cGCuUUCGUGGCGUACGCCGuggcgcgcaaccGCCGc- -3'
miRNA:   3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 129235 0.66 0.90953
Target:  5'- -aACUUgAUGGCGUGCGCC-GCCGc- -3'
miRNA:   3'- gaUGGAgUACUGCGUGCGGcCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 24726 0.66 0.90953
Target:  5'- -gGCCUCcUGGCGCACaucCCGGCg--- -3'
miRNA:   3'- gaUGGAGuACUGCGUGc--GGCCGgcaa -5'
30140 5' -57.8 NC_006273.1 + 49248 0.66 0.903569
Target:  5'- -cACCUCGUGGCccaGCGCGCCcaacaacuGGUgGUa -3'
miRNA:   3'- gaUGGAGUACUG---CGUGCGG--------CCGgCAa -5'
30140 5' -57.8 NC_006273.1 + 95977 0.66 0.903569
Target:  5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3'
miRNA:   3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 222519 0.66 0.902961
Target:  5'- -gGCgUCGUccacGGCGUagugaaaACGCCGGCCGg- -3'
miRNA:   3'- gaUGgAGUA----CUGCG-------UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 92029 0.66 0.89739
Target:  5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3'
miRNA:   3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 195596 0.66 0.890994
Target:  5'- --uCCUCGUGugGCA-GuuGGCCa-- -3'
miRNA:   3'- gauGGAGUACugCGUgCggCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 2237 0.66 0.890994
Target:  5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3'
miRNA:   3'- gauggaGUACUGCG----UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 170614 0.66 0.890994
Target:  5'- aCUGCCcCAcGGCGUAgGCCuucgcGGCCGUc -3'
miRNA:   3'- -GAUGGaGUaCUGCGUgCGG-----CCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 108941 0.66 0.890994
Target:  5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3'
miRNA:   3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 161505 0.66 0.884386
Target:  5'- -cAUCUC-UGugGCGCGCCcgcaugucGGCCGc- -3'
miRNA:   3'- gaUGGAGuACugCGUGCGG--------CCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 212660 0.67 0.877569
Target:  5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3'
miRNA:   3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5'
30140 5' -57.8 NC_006273.1 + 66618 0.67 0.870547
Target:  5'- gCUACCUCAUGACGgGCaCUGuGCgCGa- -3'
miRNA:   3'- -GAUGGAGUACUGCgUGcGGC-CG-GCaa -5'
30140 5' -57.8 NC_006273.1 + 68181 0.67 0.870547
Target:  5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3'
miRNA:   3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.