Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30140 | 5' | -57.8 | NC_006273.1 | + | 117439 | 0.67 | 0.863325 |
Target: 5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3' miRNA: 3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 101163 | 0.67 | 0.855907 |
Target: 5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3' miRNA: 3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 212660 | 0.67 | 0.877569 |
Target: 5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3' miRNA: 3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 74177 | 0.67 | 0.863325 |
Target: 5'- -cACCUac-GugGCGCGCCGGCg--- -3' miRNA: 3'- gaUGGAguaCugCGUGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 32828 | 0.67 | 0.84051 |
Target: 5'- gCUGCCgUcgGcCGcCACGCCGGCCa-- -3' miRNA: 3'- -GAUGGaGuaCuGC-GUGCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 39107 | 0.67 | 0.84051 |
Target: 5'- gUGCCcuUCGUGcCGCACGCCuGCCc-- -3' miRNA: 3'- gAUGG--AGUACuGCGUGCGGcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 142946 | 0.67 | 0.8483 |
Target: 5'- gCUACCgaCGUGccuuuUGCACGuuGGCCGa- -3' miRNA: 3'- -GAUGGa-GUACu----GCGUGCggCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 66618 | 0.67 | 0.870547 |
Target: 5'- gCUACCUCAUGACGgGCaCUGuGCgCGa- -3' miRNA: 3'- -GAUGGAGUACUGCgUGcGGC-CG-GCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 56178 | 0.67 | 0.863325 |
Target: 5'- --cCCUCuGUGACGCuguCGuCCGGCCa-- -3' miRNA: 3'- gauGGAG-UACUGCGu--GC-GGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 148544 | 0.67 | 0.855907 |
Target: 5'- -gACCUCuuugaGACGgGCGCCGcCCGUUc -3' miRNA: 3'- gaUGGAGua---CUGCgUGCGGCcGGCAA- -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 75246 | 0.67 | 0.863325 |
Target: 5'- gUACCUaugGACGaaGCGCUGGCCGc- -3' miRNA: 3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 105848 | 0.67 | 0.8483 |
Target: 5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3' miRNA: 3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 158208 | 0.68 | 0.802497 |
Target: 5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3' miRNA: 3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 129851 | 0.68 | 0.832542 |
Target: 5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3' miRNA: 3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 173787 | 0.68 | 0.807644 |
Target: 5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3' miRNA: 3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 67708 | 0.68 | 0.799037 |
Target: 5'- -cGCCcCGUGACGacgaACGgCGGCCGa- -3' miRNA: 3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 67294 | 0.68 | 0.824404 |
Target: 5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3' miRNA: 3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 2624 | 0.68 | 0.816102 |
Target: 5'- aCUAUCUgCAaGACGCcagACGCCGcGCCGa- -3' miRNA: 3'- -GAUGGA-GUaCUGCG---UGCGGC-CGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 167384 | 0.68 | 0.807644 |
Target: 5'- -cACC-CAUGACGC-CGCCGGgCa-- -3' miRNA: 3'- gaUGGaGUACUGCGuGCGGCCgGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 134797 | 0.68 | 0.832542 |
Target: 5'- -gACuCUUAUGAuuaCGCACGCuCGGCUGg- -3' miRNA: 3'- gaUG-GAGUACU---GCGUGCG-GCCGGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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