Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30140 | 5' | -57.8 | NC_006273.1 | + | 101163 | 0.67 | 0.855907 |
Target: 5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3' miRNA: 3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 90202 | 0.67 | 0.863325 |
Target: 5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3' miRNA: 3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 68181 | 0.67 | 0.870547 |
Target: 5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3' miRNA: 3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 212660 | 0.67 | 0.877569 |
Target: 5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3' miRNA: 3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 74177 | 0.67 | 0.863325 |
Target: 5'- -cACCUac-GugGCGCGCCGGCg--- -3' miRNA: 3'- gaUGGAguaCugCGUGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 75246 | 0.67 | 0.863325 |
Target: 5'- gUACCUaugGACGaaGCGCUGGCCGc- -3' miRNA: 3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 117439 | 0.67 | 0.863325 |
Target: 5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3' miRNA: 3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 56178 | 0.67 | 0.863325 |
Target: 5'- --cCCUCuGUGACGCuguCGuCCGGCCa-- -3' miRNA: 3'- gauGGAG-UACUGCGu--GC-GGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 66618 | 0.67 | 0.870547 |
Target: 5'- gCUACCUCAUGACGgGCaCUGuGCgCGa- -3' miRNA: 3'- -GAUGGAGUACUGCgUGcGGC-CG-GCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 108941 | 0.66 | 0.890994 |
Target: 5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3' miRNA: 3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 195596 | 0.66 | 0.890994 |
Target: 5'- --uCCUCGUGugGCA-GuuGGCCa-- -3' miRNA: 3'- gauGGAGUACugCGUgCggCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 161505 | 0.66 | 0.884386 |
Target: 5'- -cAUCUC-UGugGCGCGCCcgcaugucGGCCGc- -3' miRNA: 3'- gaUGGAGuACugCGUGCGG--------CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 169807 | 0.66 | 0.915269 |
Target: 5'- --cCCUCucGACGU-CGCCGGCUGUc -3' miRNA: 3'- gauGGAGuaCUGCGuGCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 55322 | 0.66 | 0.915269 |
Target: 5'- cCUGCCgcguaUCggGAUGCACGCCGaagacggcGCCGc- -3' miRNA: 3'- -GAUGG-----AGuaCUGCGUGCGGC--------CGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 129235 | 0.66 | 0.90953 |
Target: 5'- -aACUUgAUGGCGUGCGCC-GCCGc- -3' miRNA: 3'- gaUGGAgUACUGCGUGCGGcCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 49248 | 0.66 | 0.903569 |
Target: 5'- -cACCUCGUGGCccaGCGCGCCcaacaacuGGUgGUa -3' miRNA: 3'- gaUGGAGUACUG---CGUGCGG--------CCGgCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 102825 | 0.66 | 0.915269 |
Target: 5'- --uCgUCAUcGAaagGCGCGCCGGCCGc- -3' miRNA: 3'- gauGgAGUA-CUg--CGUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 222519 | 0.66 | 0.902961 |
Target: 5'- -gGCgUCGUccacGGCGUagugaaaACGCCGGCCGg- -3' miRNA: 3'- gaUGgAGUA----CUGCG-------UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 2237 | 0.66 | 0.890994 |
Target: 5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3' miRNA: 3'- gauggaGUACUGCG----UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 188485 | 0.66 | 0.915269 |
Target: 5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3' miRNA: 3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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