miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 135601 1.06 0.004912
Target:  5'- gCUACCUCAUGACGCACGCCGGCCGUUa -3'
miRNA:   3'- -GAUGGAGUACUGCGUGCGGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 101477 0.8 0.243467
Target:  5'- uCUACCUCAUGGgcCGCgacaagGCGCUGGCCGUg -3'
miRNA:   3'- -GAUGGAGUACU--GCG------UGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 198169 0.75 0.447215
Target:  5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3'
miRNA:   3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 186439 0.74 0.483234
Target:  5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCCGa- -3'
miRNA:   3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 196673 0.74 0.51114
Target:  5'- -aAUCUuggCGUGGCGCACGCagCGGCCGUa -3'
miRNA:   3'- gaUGGA---GUACUGCGUGCG--GCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 45342 0.73 0.530111
Target:  5'- -cAgCUCAa-GCGCGCGCCGGCCGa- -3'
miRNA:   3'- gaUgGAGUacUGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 70828 0.72 0.598213
Target:  5'- -gGCCUUcgGcACGCugGCgGGCCGa- -3'
miRNA:   3'- gaUGGAGuaC-UGCGugCGgCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 50954 0.72 0.598213
Target:  5'- uUACCg-GUGACGCcagcacCGCCGGCCGa- -3'
miRNA:   3'- gAUGGagUACUGCGu-----GCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 144087 0.71 0.627869
Target:  5'- -gACUUUAUGACGCGCG-UGGCCGc- -3'
miRNA:   3'- gaUGGAGUACUGCGUGCgGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 104965 0.71 0.63777
Target:  5'- -cGCCaUCAUGACGCGgGCgCGGUCGc- -3'
miRNA:   3'- gaUGG-AGUACUGCGUgCG-GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 174114 0.71 0.647667
Target:  5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3'
miRNA:   3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 112589 0.71 0.677257
Target:  5'- uCUACCUgGcUGGCGCaguGCGCCGagcaGCCGUUg -3'
miRNA:   3'- -GAUGGAgU-ACUGCG---UGCGGC----CGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 171000 0.7 0.706536
Target:  5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3'
miRNA:   3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 154871 0.7 0.706536
Target:  5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3'
miRNA:   3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 206805 0.7 0.716188
Target:  5'- -cGCCUCGcuuagaGCGCugGCCGGCUGc- -3'
miRNA:   3'- gaUGGAGUac----UGCGugCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 192969 0.7 0.725773
Target:  5'- -cACCUUuuugGGCGCGCGCUcGCCGUc -3'
miRNA:   3'- gaUGGAGua--CUGCGUGCGGcCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 109518 0.7 0.735283
Target:  5'- gUGCCUCc---UGCAUGCUGGCCGUc -3'
miRNA:   3'- gAUGGAGuacuGCGUGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 18539 0.69 0.744709
Target:  5'- -gGCCUUuUGACcaCAUGCCGGCCGc- -3'
miRNA:   3'- gaUGGAGuACUGc-GUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 159291 0.69 0.754043
Target:  5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3'
miRNA:   3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 27210 0.69 0.754043
Target:  5'- -gGCCUUAUGugGCuGCGCCGuuuuGCUGUc -3'
miRNA:   3'- gaUGGAGUACugCG-UGCGGC----CGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.