miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 56178 0.67 0.863325
Target:  5'- --cCCUCuGUGACGCuguCGuCCGGCCa-- -3'
miRNA:   3'- gauGGAG-UACUGCGu--GC-GGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 90202 0.67 0.863325
Target:  5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3'
miRNA:   3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 74177 0.67 0.863325
Target:  5'- -cACCUac-GugGCGCGCCGGCg--- -3'
miRNA:   3'- gaUGGAguaCugCGUGCGGCCGgcaa -5'
30140 5' -57.8 NC_006273.1 + 75246 0.67 0.863325
Target:  5'- gUACCUaugGACGaaGCGCUGGCCGc- -3'
miRNA:   3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 117439 0.67 0.863325
Target:  5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3'
miRNA:   3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 101163 0.67 0.855907
Target:  5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3'
miRNA:   3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 101626 0.67 0.855907
Target:  5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3'
miRNA:   3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 148544 0.67 0.855907
Target:  5'- -gACCUCuuugaGACGgGCGCCGcCCGUUc -3'
miRNA:   3'- gaUGGAGua---CUGCgUGCGGCcGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 142946 0.67 0.8483
Target:  5'- gCUACCgaCGUGccuuuUGCACGuuGGCCGa- -3'
miRNA:   3'- -GAUGGa-GUACu----GCGUGCggCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 105848 0.67 0.8483
Target:  5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3'
miRNA:   3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 32828 0.67 0.84051
Target:  5'- gCUGCCgUcgGcCGcCACGCCGGCCa-- -3'
miRNA:   3'- -GAUGGaGuaCuGC-GUGCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 39107 0.67 0.84051
Target:  5'- gUGCCcuUCGUGcCGCACGCCuGCCc-- -3'
miRNA:   3'- gAUGG--AGUACuGCGUGCGGcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 134797 0.68 0.832542
Target:  5'- -gACuCUUAUGAuuaCGCACGCuCGGCUGg- -3'
miRNA:   3'- gaUG-GAGUACU---GCGUGCG-GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 129851 0.68 0.832542
Target:  5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3'
miRNA:   3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 67294 0.68 0.824404
Target:  5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3'
miRNA:   3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5'
30140 5' -57.8 NC_006273.1 + 2624 0.68 0.816102
Target:  5'- aCUAUCUgCAaGACGCcagACGCCGcGCCGa- -3'
miRNA:   3'- -GAUGGA-GUaCUGCG---UGCGGC-CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 173787 0.68 0.807644
Target:  5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3'
miRNA:   3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 167384 0.68 0.807644
Target:  5'- -cACC-CAUGACGC-CGCCGGgCa-- -3'
miRNA:   3'- gaUGGaGUACUGCGuGCGGCCgGcaa -5'
30140 5' -57.8 NC_006273.1 + 158208 0.68 0.802497
Target:  5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3'
miRNA:   3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 67708 0.68 0.799037
Target:  5'- -cGCCcCGUGACGacgaACGgCGGCCGa- -3'
miRNA:   3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.