Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30140 | 5' | -57.8 | NC_006273.1 | + | 74177 | 0.67 | 0.863325 |
Target: 5'- -cACCUac-GugGCGCGCCGGCg--- -3' miRNA: 3'- gaUGGAguaCugCGUGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 75246 | 0.67 | 0.863325 |
Target: 5'- gUACCUaugGACGaaGCGCUGGCCGc- -3' miRNA: 3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 90202 | 0.67 | 0.863325 |
Target: 5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3' miRNA: 3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 92029 | 0.66 | 0.89739 |
Target: 5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3' miRNA: 3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 95080 | 0.69 | 0.781407 |
Target: 5'- -cGCCUUAUccugGGCGUugGCCGGucCCGUg -3' miRNA: 3'- gaUGGAGUA----CUGCGugCGGCC--GGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 95977 | 0.66 | 0.903569 |
Target: 5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3' miRNA: 3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 101163 | 0.67 | 0.855907 |
Target: 5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3' miRNA: 3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 101477 | 0.8 | 0.243467 |
Target: 5'- uCUACCUCAUGGgcCGCgacaagGCGCUGGCCGUg -3' miRNA: 3'- -GAUGGAGUACU--GCG------UGCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 101626 | 0.67 | 0.855907 |
Target: 5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3' miRNA: 3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 102825 | 0.66 | 0.915269 |
Target: 5'- --uCgUCAUcGAaagGCGCGCCGGCCGc- -3' miRNA: 3'- gauGgAGUA-CUg--CGUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 104965 | 0.71 | 0.63777 |
Target: 5'- -cGCCaUCAUGACGCGgGCgCGGUCGc- -3' miRNA: 3'- gaUGG-AGUACUGCGUgCG-GCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 105848 | 0.67 | 0.8483 |
Target: 5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3' miRNA: 3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 108941 | 0.66 | 0.890994 |
Target: 5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3' miRNA: 3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 109518 | 0.7 | 0.735283 |
Target: 5'- gUGCCUCc---UGCAUGCUGGCCGUc -3' miRNA: 3'- gAUGGAGuacuGCGUGCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 112589 | 0.71 | 0.677257 |
Target: 5'- uCUACCUgGcUGGCGCaguGCGCCGagcaGCCGUUg -3' miRNA: 3'- -GAUGGAgU-ACUGCG---UGCGGC----CGGCAA- -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 117439 | 0.67 | 0.863325 |
Target: 5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3' miRNA: 3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 129235 | 0.66 | 0.90953 |
Target: 5'- -aACUUgAUGGCGUGCGCC-GCCGc- -3' miRNA: 3'- gaUGGAgUACUGCGUGCGGcCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 129851 | 0.68 | 0.832542 |
Target: 5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3' miRNA: 3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 131472 | 0.66 | 0.915269 |
Target: 5'- -cGCuUUCGUGGCGUACGCCGuggcgcgcaaccGCCGc- -3' miRNA: 3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 134797 | 0.68 | 0.832542 |
Target: 5'- -gACuCUUAUGAuuaCGCACGCuCGGCUGg- -3' miRNA: 3'- gaUG-GAGUACU---GCGUGCG-GCCGGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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