miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 135601 1.06 0.004912
Target:  5'- gCUACCUCAUGACGCACGCCGGCCGUUa -3'
miRNA:   3'- -GAUGGAGUACUGCGUGCGGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 142946 0.67 0.8483
Target:  5'- gCUACCgaCGUGccuuuUGCACGuuGGCCGa- -3'
miRNA:   3'- -GAUGGa-GUACu----GCGUGCggCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 144087 0.71 0.627869
Target:  5'- -gACUUUAUGACGCGCG-UGGCCGc- -3'
miRNA:   3'- gaUGGAGUACUGCGUGCgGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 148544 0.67 0.855907
Target:  5'- -gACCUCuuugaGACGgGCGCCGcCCGUUc -3'
miRNA:   3'- gaUGGAGua---CUGCgUGCGGCcGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 152843 0.69 0.790289
Target:  5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3'
miRNA:   3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 154871 0.7 0.706536
Target:  5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3'
miRNA:   3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 158208 0.68 0.802497
Target:  5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3'
miRNA:   3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 159291 0.69 0.754043
Target:  5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3'
miRNA:   3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 161505 0.66 0.884386
Target:  5'- -cAUCUC-UGugGCGCGCCcgcaugucGGCCGc- -3'
miRNA:   3'- gaUGGAGuACugCGUGCGG--------CCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 167384 0.68 0.807644
Target:  5'- -cACC-CAUGACGC-CGCCGGgCa-- -3'
miRNA:   3'- gaUGGaGUACUGCGuGCGGCCgGcaa -5'
30140 5' -57.8 NC_006273.1 + 169807 0.66 0.915269
Target:  5'- --cCCUCucGACGU-CGCCGGCUGUc -3'
miRNA:   3'- gauGGAGuaCUGCGuGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 170614 0.66 0.890994
Target:  5'- aCUGCCcCAcGGCGUAgGCCuucgcGGCCGUc -3'
miRNA:   3'- -GAUGGaGUaCUGCGUgCGG-----CCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 171000 0.7 0.706536
Target:  5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3'
miRNA:   3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 173787 0.68 0.807644
Target:  5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3'
miRNA:   3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 174114 0.71 0.647667
Target:  5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3'
miRNA:   3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 186439 0.74 0.483234
Target:  5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCCGa- -3'
miRNA:   3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 188485 0.66 0.915269
Target:  5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3'
miRNA:   3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 192969 0.7 0.725773
Target:  5'- -cACCUUuuugGGCGCGCGCUcGCCGUc -3'
miRNA:   3'- gaUGGAGua--CUGCGUGCGGcCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 195596 0.66 0.890994
Target:  5'- --uCCUCGUGugGCA-GuuGGCCa-- -3'
miRNA:   3'- gauGGAGUACugCGUgCggCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 196673 0.74 0.51114
Target:  5'- -aAUCUuggCGUGGCGCACGCagCGGCCGUa -3'
miRNA:   3'- gaUGGA---GUACUGCGUGCG--GCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.