Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30140 | 5' | -57.8 | NC_006273.1 | + | 222519 | 0.66 | 0.902961 |
Target: 5'- -gGCgUCGUccacGGCGUagugaaaACGCCGGCCGg- -3' miRNA: 3'- gaUGgAGUA----CUGCG-------UGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 215698 | 0.69 | 0.790289 |
Target: 5'- -aGCgaCAUGGCGgcaACGCCGGCgGUUa -3' miRNA: 3'- gaUGgaGUACUGCg--UGCGGCCGgCAA- -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 212660 | 0.67 | 0.877569 |
Target: 5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3' miRNA: 3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 206805 | 0.7 | 0.716188 |
Target: 5'- -cGCCUCGcuuagaGCGCugGCCGGCUGc- -3' miRNA: 3'- gaUGGAGUac----UGCGugCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 205605 | 0.69 | 0.763276 |
Target: 5'- -aACCUCAUGgaguuuGCGCGCGUCgGGCUGc- -3' miRNA: 3'- gaUGGAGUAC------UGCGUGCGG-CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 198169 | 0.75 | 0.447215 |
Target: 5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3' miRNA: 3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 196673 | 0.74 | 0.51114 |
Target: 5'- -aAUCUuggCGUGGCGCACGCagCGGCCGUa -3' miRNA: 3'- gaUGGA---GUACUGCGUGCG--GCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 195596 | 0.66 | 0.890994 |
Target: 5'- --uCCUCGUGugGCA-GuuGGCCa-- -3' miRNA: 3'- gauGGAGUACugCGUgCggCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 192969 | 0.7 | 0.725773 |
Target: 5'- -cACCUUuuugGGCGCGCGCUcGCCGUc -3' miRNA: 3'- gaUGGAGua--CUGCGUGCGGcCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 188485 | 0.66 | 0.915269 |
Target: 5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3' miRNA: 3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 186439 | 0.74 | 0.483234 |
Target: 5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCCGa- -3' miRNA: 3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 174114 | 0.71 | 0.647667 |
Target: 5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3' miRNA: 3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 173787 | 0.68 | 0.807644 |
Target: 5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3' miRNA: 3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 171000 | 0.7 | 0.706536 |
Target: 5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3' miRNA: 3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 170614 | 0.66 | 0.890994 |
Target: 5'- aCUGCCcCAcGGCGUAgGCCuucgcGGCCGUc -3' miRNA: 3'- -GAUGGaGUaCUGCGUgCGG-----CCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 169807 | 0.66 | 0.915269 |
Target: 5'- --cCCUCucGACGU-CGCCGGCUGUc -3' miRNA: 3'- gauGGAGuaCUGCGuGCGGCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 167384 | 0.68 | 0.807644 |
Target: 5'- -cACC-CAUGACGC-CGCCGGgCa-- -3' miRNA: 3'- gaUGGaGUACUGCGuGCGGCCgGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 161505 | 0.66 | 0.884386 |
Target: 5'- -cAUCUC-UGugGCGCGCCcgcaugucGGCCGc- -3' miRNA: 3'- gaUGGAGuACugCGUGCGG--------CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 159291 | 0.69 | 0.754043 |
Target: 5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3' miRNA: 3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 158208 | 0.68 | 0.802497 |
Target: 5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3' miRNA: 3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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