miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 154871 0.7 0.706536
Target:  5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3'
miRNA:   3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 152843 0.69 0.790289
Target:  5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3'
miRNA:   3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 148544 0.67 0.855907
Target:  5'- -gACCUCuuugaGACGgGCGCCGcCCGUUc -3'
miRNA:   3'- gaUGGAGua---CUGCgUGCGGCcGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 144087 0.71 0.627869
Target:  5'- -gACUUUAUGACGCGCG-UGGCCGc- -3'
miRNA:   3'- gaUGGAGUACUGCGUGCgGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 142946 0.67 0.8483
Target:  5'- gCUACCgaCGUGccuuuUGCACGuuGGCCGa- -3'
miRNA:   3'- -GAUGGa-GUACu----GCGUGCggCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 135601 1.06 0.004912
Target:  5'- gCUACCUCAUGACGCACGCCGGCCGUUa -3'
miRNA:   3'- -GAUGGAGUACUGCGUGCGGCCGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 134797 0.68 0.832542
Target:  5'- -gACuCUUAUGAuuaCGCACGCuCGGCUGg- -3'
miRNA:   3'- gaUG-GAGUACU---GCGUGCG-GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 131472 0.66 0.915269
Target:  5'- -cGCuUUCGUGGCGUACGCCGuggcgcgcaaccGCCGc- -3'
miRNA:   3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 129851 0.68 0.832542
Target:  5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3'
miRNA:   3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 129235 0.66 0.90953
Target:  5'- -aACUUgAUGGCGUGCGCC-GCCGc- -3'
miRNA:   3'- gaUGGAgUACUGCGUGCGGcCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 117439 0.67 0.863325
Target:  5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3'
miRNA:   3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 112589 0.71 0.677257
Target:  5'- uCUACCUgGcUGGCGCaguGCGCCGagcaGCCGUUg -3'
miRNA:   3'- -GAUGGAgU-ACUGCG---UGCGGC----CGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 109518 0.7 0.735283
Target:  5'- gUGCCUCc---UGCAUGCUGGCCGUc -3'
miRNA:   3'- gAUGGAGuacuGCGUGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 108941 0.66 0.890994
Target:  5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3'
miRNA:   3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 105848 0.67 0.8483
Target:  5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3'
miRNA:   3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 104965 0.71 0.63777
Target:  5'- -cGCCaUCAUGACGCGgGCgCGGUCGc- -3'
miRNA:   3'- gaUGG-AGUACUGCGUgCG-GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 102825 0.66 0.915269
Target:  5'- --uCgUCAUcGAaagGCGCGCCGGCCGc- -3'
miRNA:   3'- gauGgAGUA-CUg--CGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 101626 0.67 0.855907
Target:  5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3'
miRNA:   3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 101477 0.8 0.243467
Target:  5'- uCUACCUCAUGGgcCGCgacaagGCGCUGGCCGUg -3'
miRNA:   3'- -GAUGGAGUACU--GCG------UGCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 101163 0.67 0.855907
Target:  5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3'
miRNA:   3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.