miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 95977 0.66 0.903569
Target:  5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3'
miRNA:   3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 95080 0.69 0.781407
Target:  5'- -cGCCUUAUccugGGCGUugGCCGGucCCGUg -3'
miRNA:   3'- gaUGGAGUA----CUGCGugCGGCC--GGCAa -5'
30140 5' -57.8 NC_006273.1 + 92029 0.66 0.89739
Target:  5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3'
miRNA:   3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 90202 0.67 0.863325
Target:  5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3'
miRNA:   3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 75246 0.67 0.863325
Target:  5'- gUACCUaugGACGaaGCGCUGGCCGc- -3'
miRNA:   3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 74177 0.67 0.863325
Target:  5'- -cACCUac-GugGCGCGCCGGCg--- -3'
miRNA:   3'- gaUGGAguaCugCGUGCGGCCGgcaa -5'
30140 5' -57.8 NC_006273.1 + 70828 0.72 0.598213
Target:  5'- -gGCCUUcgGcACGCugGCgGGCCGa- -3'
miRNA:   3'- gaUGGAGuaC-UGCGugCGgCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 68181 0.67 0.870547
Target:  5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3'
miRNA:   3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 67708 0.68 0.799037
Target:  5'- -cGCCcCGUGACGacgaACGgCGGCCGa- -3'
miRNA:   3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 67294 0.68 0.824404
Target:  5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3'
miRNA:   3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5'
30140 5' -57.8 NC_006273.1 + 66618 0.67 0.870547
Target:  5'- gCUACCUCAUGACGgGCaCUGuGCgCGa- -3'
miRNA:   3'- -GAUGGAGUACUGCgUGcGGC-CG-GCaa -5'
30140 5' -57.8 NC_006273.1 + 64509 0.69 0.763276
Target:  5'- --cCCUCcugauGUGGCGCAgCGCaCGGCCGa- -3'
miRNA:   3'- gauGGAG-----UACUGCGU-GCG-GCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 56178 0.67 0.863325
Target:  5'- --cCCUCuGUGACGCuguCGuCCGGCCa-- -3'
miRNA:   3'- gauGGAG-UACUGCGu--GC-GGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 55322 0.66 0.915269
Target:  5'- cCUGCCgcguaUCggGAUGCACGCCGaagacggcGCCGc- -3'
miRNA:   3'- -GAUGG-----AGuaCUGCGUGCGGC--------CGGCaa -5'
30140 5' -57.8 NC_006273.1 + 54023 0.69 0.790289
Target:  5'- -gACCgugagcgGACGuCACGCCGGCgGUUg -3'
miRNA:   3'- gaUGGagua---CUGC-GUGCGGCCGgCAA- -5'
30140 5' -57.8 NC_006273.1 + 50954 0.72 0.598213
Target:  5'- uUACCg-GUGACGCcagcacCGCCGGCCGa- -3'
miRNA:   3'- gAUGGagUACUGCGu-----GCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 49248 0.66 0.903569
Target:  5'- -cACCUCGUGGCccaGCGCGCCcaacaacuGGUgGUa -3'
miRNA:   3'- gaUGGAGUACUG---CGUGCGG--------CCGgCAa -5'
30140 5' -57.8 NC_006273.1 + 45342 0.73 0.530111
Target:  5'- -cAgCUCAa-GCGCGCGCCGGCCGa- -3'
miRNA:   3'- gaUgGAGUacUGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 39107 0.67 0.84051
Target:  5'- gUGCCcuUCGUGcCGCACGCCuGCCc-- -3'
miRNA:   3'- gAUGG--AGUACuGCGUGCGGcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 32828 0.67 0.84051
Target:  5'- gCUGCCgUcgGcCGcCACGCCGGCCa-- -3'
miRNA:   3'- -GAUGGaGuaCuGC-GUGCGGCCGGcaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.