miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30140 5' -57.8 NC_006273.1 + 222519 0.66 0.902961
Target:  5'- -gGCgUCGUccacGGCGUagugaaaACGCCGGCCGg- -3'
miRNA:   3'- gaUGgAGUA----CUGCG-------UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 148544 0.67 0.855907
Target:  5'- -gACCUCuuugaGACGgGCGCCGcCCGUUc -3'
miRNA:   3'- gaUGGAGua---CUGCgUGCGGCcGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 74177 0.67 0.863325
Target:  5'- -cACCUac-GugGCGCGCCGGCg--- -3'
miRNA:   3'- gaUGGAguaCugCGUGCGGCCGgcaa -5'
30140 5' -57.8 NC_006273.1 + 75246 0.67 0.863325
Target:  5'- gUACCUaugGACGaaGCGCUGGCCGc- -3'
miRNA:   3'- gAUGGAguaCUGCg-UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 117439 0.67 0.863325
Target:  5'- gCUACCguggCA-GGUGCGuCGCCGGCUGUg -3'
miRNA:   3'- -GAUGGa---GUaCUGCGU-GCGGCCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 56178 0.67 0.863325
Target:  5'- --cCCUCuGUGACGCuguCGuCCGGCCa-- -3'
miRNA:   3'- gauGGAG-UACUGCGu--GC-GGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 66618 0.67 0.870547
Target:  5'- gCUACCUCAUGACGgGCaCUGuGCgCGa- -3'
miRNA:   3'- -GAUGGAGUACUGCgUGcGGC-CG-GCaa -5'
30140 5' -57.8 NC_006273.1 + 170614 0.66 0.890994
Target:  5'- aCUGCCcCAcGGCGUAgGCCuucgcGGCCGUc -3'
miRNA:   3'- -GAUGGaGUaCUGCGUgCGG-----CCGGCAa -5'
30140 5' -57.8 NC_006273.1 + 2237 0.66 0.890994
Target:  5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3'
miRNA:   3'- gauggaGUACUGCG----UGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 142946 0.67 0.8483
Target:  5'- gCUACCgaCGUGccuuuUGCACGuuGGCCGa- -3'
miRNA:   3'- -GAUGGa-GUACu----GCGUGCggCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 39107 0.67 0.84051
Target:  5'- gUGCCcuUCGUGcCGCACGCCuGCCc-- -3'
miRNA:   3'- gAUGG--AGUACuGCGUGCGGcCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 32828 0.67 0.84051
Target:  5'- gCUGCCgUcgGcCGcCACGCCGGCCa-- -3'
miRNA:   3'- -GAUGGaGuaCuGC-GUGCGGCCGGcaa -5'
30140 5' -57.8 NC_006273.1 + 45342 0.73 0.530111
Target:  5'- -cAgCUCAa-GCGCGCGCCGGCCGa- -3'
miRNA:   3'- gaUgGAGUacUGCGUGCGGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 144087 0.71 0.627869
Target:  5'- -gACUUUAUGACGCGCG-UGGCCGc- -3'
miRNA:   3'- gaUGGAGUACUGCGUGCgGCCGGCaa -5'
30140 5' -57.8 NC_006273.1 + 112589 0.71 0.677257
Target:  5'- uCUACCUgGcUGGCGCaguGCGCCGagcaGCCGUUg -3'
miRNA:   3'- -GAUGGAgU-ACUGCG---UGCGGC----CGGCAA- -5'
30140 5' -57.8 NC_006273.1 + 95080 0.69 0.781407
Target:  5'- -cGCCUUAUccugGGCGUugGCCGGucCCGUg -3'
miRNA:   3'- gaUGGAGUA----CUGCGugCGGCC--GGCAa -5'
30140 5' -57.8 NC_006273.1 + 54023 0.69 0.790289
Target:  5'- -gACCgugagcgGACGuCACGCCGGCgGUUg -3'
miRNA:   3'- gaUGGagua---CUGC-GUGCGGCCGgCAA- -5'
30140 5' -57.8 NC_006273.1 + 215698 0.69 0.790289
Target:  5'- -aGCgaCAUGGCGgcaACGCCGGCgGUUa -3'
miRNA:   3'- gaUGgaGUACUGCg--UGCGGCCGgCAA- -5'
30140 5' -57.8 NC_006273.1 + 167384 0.68 0.807644
Target:  5'- -cACC-CAUGACGC-CGCCGGgCa-- -3'
miRNA:   3'- gaUGGaGUACUGCGuGCGGCCgGcaa -5'
30140 5' -57.8 NC_006273.1 + 134797 0.68 0.832542
Target:  5'- -gACuCUUAUGAuuaCGCACGCuCGGCUGg- -3'
miRNA:   3'- gaUG-GAGUACU---GCGUGCG-GCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.