Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30140 | 5' | -57.8 | NC_006273.1 | + | 101163 | 0.67 | 0.855907 |
Target: 5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3' miRNA: 3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 101626 | 0.67 | 0.855907 |
Target: 5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3' miRNA: 3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 173787 | 0.68 | 0.807644 |
Target: 5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3' miRNA: 3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 152843 | 0.69 | 0.790289 |
Target: 5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3' miRNA: 3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 15670 | 0.66 | 0.915269 |
Target: 5'- aCUGCCUgGUGACGaCGCGUUcGUCGa- -3' miRNA: 3'- -GAUGGAgUACUGC-GUGCGGcCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 195596 | 0.66 | 0.890994 |
Target: 5'- --uCCUCGUGugGCA-GuuGGCCa-- -3' miRNA: 3'- gauGGAGUACugCGUgCggCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 129851 | 0.68 | 0.832542 |
Target: 5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3' miRNA: 3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 64509 | 0.69 | 0.763276 |
Target: 5'- --cCCUCcugauGUGGCGCAgCGCaCGGCCGa- -3' miRNA: 3'- gauGGAG-----UACUGCGU-GCG-GCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 161505 | 0.66 | 0.884386 |
Target: 5'- -cAUCUC-UGugGCGCGCCcgcaugucGGCCGc- -3' miRNA: 3'- gaUGGAGuACugCGUGCGG--------CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 205605 | 0.69 | 0.763276 |
Target: 5'- -aACCUCAUGgaguuuGCGCGCGUCgGGCUGc- -3' miRNA: 3'- gaUGGAGUAC------UGCGUGCGG-CCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 105848 | 0.67 | 0.8483 |
Target: 5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3' miRNA: 3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 90202 | 0.67 | 0.863325 |
Target: 5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3' miRNA: 3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 67294 | 0.68 | 0.824404 |
Target: 5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3' miRNA: 3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 2624 | 0.68 | 0.816102 |
Target: 5'- aCUAUCUgCAaGACGCcagACGCCGcGCCGa- -3' miRNA: 3'- -GAUGGA-GUaCUGCG---UGCGGC-CGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 158208 | 0.68 | 0.802497 |
Target: 5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3' miRNA: 3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 67708 | 0.68 | 0.799037 |
Target: 5'- -cGCCcCGUGACGacgaACGgCGGCCGa- -3' miRNA: 3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 188485 | 0.66 | 0.915269 |
Target: 5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3' miRNA: 3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 24726 | 0.66 | 0.90953 |
Target: 5'- -gGCCUCcUGGCGCACaucCCGGCg--- -3' miRNA: 3'- gaUGGAGuACUGCGUGc--GGCCGgcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 108941 | 0.66 | 0.890994 |
Target: 5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3' miRNA: 3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5' |
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30140 | 5' | -57.8 | NC_006273.1 | + | 159291 | 0.69 | 0.754043 |
Target: 5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3' miRNA: 3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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