miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30141 3' -56.4 NC_006273.1 + 33225 0.66 0.954491
Target:  5'- cGGUa-GCGCaccgaggGCCCCGGgg--CGGCg -3'
miRNA:   3'- -CCAgaCGCGa------CGGGGCUauuaGCCGa -5'
30141 3' -56.4 NC_006273.1 + 61472 0.66 0.950588
Target:  5'- ----cGCGCcgugaGCgCCUGGUGAUCGGCg -3'
miRNA:   3'- ccagaCGCGa----CG-GGGCUAUUAGCCGa -5'
30141 3' -56.4 NC_006273.1 + 140174 0.66 0.950588
Target:  5'- gGGUCcgagGCGCcGaCCCCGGcUGggCGGCc -3'
miRNA:   3'- -CCAGa---CGCGaC-GGGGCU-AUuaGCCGa -5'
30141 3' -56.4 NC_006273.1 + 79969 0.66 0.942128
Target:  5'- cGGUCUGCgaGCUGaUCUGAcAGUUGGCc -3'
miRNA:   3'- -CCAGACG--CGACgGGGCUaUUAGCCGa -5'
30141 3' -56.4 NC_006273.1 + 33484 0.66 0.942128
Target:  5'- uGUgUGCGUUGCcgaccCCCGGUGAgCGGUc -3'
miRNA:   3'- cCAgACGCGACG-----GGGCUAUUaGCCGa -5'
30141 3' -56.4 NC_006273.1 + 187217 0.66 0.942128
Target:  5'- cGGgCUGCGUcGCCuUCGGUGacGUCGGUg -3'
miRNA:   3'- -CCaGACGCGaCGG-GGCUAU--UAGCCGa -5'
30141 3' -56.4 NC_006273.1 + 159917 0.66 0.937565
Target:  5'- gGGUcCUGCGUUGCUacugCCGGcGA-CGGCUc -3'
miRNA:   3'- -CCA-GACGCGACGG----GGCUaUUaGCCGA- -5'
30141 3' -56.4 NC_006273.1 + 180058 0.66 0.937565
Target:  5'- cGUCUucgGCGUgcaUCCCGAUAcgCGGCa -3'
miRNA:   3'- cCAGA---CGCGac-GGGGCUAUuaGCCGa -5'
30141 3' -56.4 NC_006273.1 + 129534 0.67 0.93278
Target:  5'- uGGcCgGCGCUGCgCCGcgccgccUCGGCUg -3'
miRNA:   3'- -CCaGaCGCGACGgGGCuauu---AGCCGA- -5'
30141 3' -56.4 NC_006273.1 + 138755 0.67 0.922533
Target:  5'- aGGuUCUG-GCUGCacccgCCCGAUcccucGUCGGCUu -3'
miRNA:   3'- -CC-AGACgCGACG-----GGGCUAu----UAGCCGA- -5'
30141 3' -56.4 NC_006273.1 + 29401 0.67 0.911388
Target:  5'- cGUCgcagGCGUagacgGCCCCGGUAua-GGCg -3'
miRNA:   3'- cCAGa---CGCGa----CGGGGCUAUuagCCGa -5'
30141 3' -56.4 NC_006273.1 + 117507 0.67 0.911388
Target:  5'- uGUCcGcCGCUGCCCCcGUGA-CGGUg -3'
miRNA:   3'- cCAGaC-GCGACGGGGcUAUUaGCCGa -5'
30141 3' -56.4 NC_006273.1 + 102792 0.67 0.911388
Target:  5'- uGUUcGCGCUcGUCCCGGUAAUCGa-- -3'
miRNA:   3'- cCAGaCGCGA-CGGGGCUAUUAGCcga -5'
30141 3' -56.4 NC_006273.1 + 80296 0.67 0.905481
Target:  5'- aGGUCauccuUGCGUUGCCgCaGGUAAagcUCGGCc -3'
miRNA:   3'- -CCAG-----ACGCGACGGgG-CUAUU---AGCCGa -5'
30141 3' -56.4 NC_006273.1 + 170538 0.67 0.905481
Target:  5'- aGGUcCUGgaugGCUGCCUCGAUGGccaGGCUc -3'
miRNA:   3'- -CCA-GACg---CGACGGGGCUAUUag-CCGA- -5'
30141 3' -56.4 NC_006273.1 + 82292 0.67 0.904878
Target:  5'- uGUCUuugGUGCUGCCCgacgucaCGGUGgucccGUCGGCg -3'
miRNA:   3'- cCAGA---CGCGACGGG-------GCUAU-----UAGCCGa -5'
30141 3' -56.4 NC_006273.1 + 99092 0.68 0.899353
Target:  5'- cGUCUGCGC-GCCugagagCCGAUuAUCGGg- -3'
miRNA:   3'- cCAGACGCGaCGG------GGCUAuUAGCCga -5'
30141 3' -56.4 NC_006273.1 + 18712 0.68 0.893007
Target:  5'- ---aUGC-CUGCauaCCGGUGGUCGGCa -3'
miRNA:   3'- ccagACGcGACGg--GGCUAUUAGCCGa -5'
30141 3' -56.4 NC_006273.1 + 185525 0.68 0.872693
Target:  5'- gGGUCUGaugaaGCUGCCaaGAgucgUGGCUg -3'
miRNA:   3'- -CCAGACg----CGACGGggCUauuaGCCGA- -5'
30141 3' -56.4 NC_006273.1 + 37589 0.68 0.865511
Target:  5'- aGUCUGCGUUGUUuuauaUCGucgGGUCGGCUg -3'
miRNA:   3'- cCAGACGCGACGG-----GGCua-UUAGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.