miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30141 5' -53.6 NC_006273.1 + 197260 0.66 0.989705
Target:  5'- cGCGGGCGUgcuggGCGCgCUGGcGCUGGg-- -3'
miRNA:   3'- -CGUCUGCGa----UGUG-GACUcUGACCaga -5'
30141 5' -53.6 NC_006273.1 + 173975 0.66 0.989705
Target:  5'- cGCAGccgggcGCGCUGCucauCCgcaugGAGACgGGUUg -3'
miRNA:   3'- -CGUC------UGCGAUGu---GGa----CUCUGaCCAGa -5'
30141 5' -53.6 NC_006273.1 + 2367 0.66 0.989705
Target:  5'- cGCGGGCGUgcuggGCGCgCUGGcGCUGGg-- -3'
miRNA:   3'- -CGUCUGCGa----UGUG-GACUcUGACCaga -5'
30141 5' -53.6 NC_006273.1 + 21609 0.66 0.988341
Target:  5'- cGCGGGCacCUACACCUGcGuGCUGGg-- -3'
miRNA:   3'- -CGUCUGc-GAUGUGGACuC-UGACCaga -5'
30141 5' -53.6 NC_006273.1 + 80060 0.66 0.988341
Target:  5'- -gAGACGCUGCA--UGAG-CUGGUa- -3'
miRNA:   3'- cgUCUGCGAUGUggACUCuGACCAga -5'
30141 5' -53.6 NC_006273.1 + 142379 0.66 0.988341
Target:  5'- aGCGGAUaugGCUACACguaaUGGGugUGG-CUu -3'
miRNA:   3'- -CGUCUG---CGAUGUGg---ACUCugACCaGA- -5'
30141 5' -53.6 NC_006273.1 + 165859 0.66 0.986842
Target:  5'- cGUGGGCGCUACAguuggagagguuCCUGGGuacgaagguaACUGaGUCg -3'
miRNA:   3'- -CGUCUGCGAUGU------------GGACUC----------UGAC-CAGa -5'
30141 5' -53.6 NC_006273.1 + 115680 0.66 0.986842
Target:  5'- cGCuGACGCUgguagACGCCcugGAGcaGCUGGcCUg -3'
miRNA:   3'- -CGuCUGCGA-----UGUGGa--CUC--UGACCaGA- -5'
30141 5' -53.6 NC_006273.1 + 56271 0.66 0.985198
Target:  5'- aCGGugGCUGguCugCUGGGGCgGGUa- -3'
miRNA:   3'- cGUCugCGAU--GugGACUCUGaCCAga -5'
30141 5' -53.6 NC_006273.1 + 8810 0.66 0.985198
Target:  5'- uGCuAGGCGCaUACucgGCCUGGGGCgcgGGcUCg -3'
miRNA:   3'- -CG-UCUGCG-AUG---UGGACUCUGa--CC-AGa -5'
30141 5' -53.6 NC_006273.1 + 13377 0.66 0.983402
Target:  5'- uGCuaaACGCUAC-CCUGuguGGCUGGUa- -3'
miRNA:   3'- -CGuc-UGCGAUGuGGACu--CUGACCAga -5'
30141 5' -53.6 NC_006273.1 + 149608 0.66 0.981447
Target:  5'- cUAGAUGCcGCugCcGGGAgUGGUCa -3'
miRNA:   3'- cGUCUGCGaUGugGaCUCUgACCAGa -5'
30141 5' -53.6 NC_006273.1 + 199040 0.66 0.981447
Target:  5'- uCAGGgGCUucguGCGCgUGGGGCUGGcgCUg -3'
miRNA:   3'- cGUCUgCGA----UGUGgACUCUGACCa-GA- -5'
30141 5' -53.6 NC_006273.1 + 71024 0.66 0.981447
Target:  5'- gGCAGACGCUGaguaACCaugugauccgGAGGCUG-UCa -3'
miRNA:   3'- -CGUCUGCGAUg---UGGa---------CUCUGACcAGa -5'
30141 5' -53.6 NC_006273.1 + 43240 0.66 0.981035
Target:  5'- gGCuacGGCGCUuggagcuguagcCGCCUGGGACUuGUCUa -3'
miRNA:   3'- -CGu--CUGCGAu-----------GUGGACUCUGAcCAGA- -5'
30141 5' -53.6 NC_006273.1 + 204283 0.67 0.980193
Target:  5'- cCAGGCGCUACGuuguuuaagacggggUCgacGAGGCUGGUg- -3'
miRNA:   3'- cGUCUGCGAUGU---------------GGa--CUCUGACCAga -5'
30141 5' -53.6 NC_006273.1 + 84307 0.67 0.974543
Target:  5'- aGCuGugGCUGCACacgGAGcacgggcuGCUGGUUUc -3'
miRNA:   3'- -CGuCugCGAUGUGga-CUC--------UGACCAGA- -5'
30141 5' -53.6 NC_006273.1 + 161899 0.67 0.974543
Target:  5'- gGCaAGGUGCUGCACCUcaacaaGGGCUGGcUCUg -3'
miRNA:   3'- -CG-UCUGCGAUGUGGAc-----UCUGACC-AGA- -5'
30141 5' -53.6 NC_006273.1 + 67302 0.67 0.974543
Target:  5'- uGCuGGCGC---GCCggcGGGACUGGUCc -3'
miRNA:   3'- -CGuCUGCGaugUGGa--CUCUGACCAGa -5'
30141 5' -53.6 NC_006273.1 + 202324 0.67 0.969005
Target:  5'- aGCAGGCGC-GCACCcGAcGGC-GGUUUg -3'
miRNA:   3'- -CGUCUGCGaUGUGGaCU-CUGaCCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.