miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30142 3' -54.3 NC_006273.1 + 85941 0.66 0.987913
Target:  5'- gCGGAcuaccacCGGCGCCGCCguuGCCGUa- -3'
miRNA:   3'- -GCUUuuu----GCUGCGGCGGug-CGGCAga -5'
30142 3' -54.3 NC_006273.1 + 234449 0.66 0.987913
Target:  5'- cCGAAAacAACGcCGUCGCCGCcCCGa-- -3'
miRNA:   3'- -GCUUU--UUGCuGCGGCGGUGcGGCaga -5'
30142 3' -54.3 NC_006273.1 + 143069 0.66 0.987913
Target:  5'- gCGAGAu-CG-UGCgCGCCGCGCUGUg- -3'
miRNA:   3'- -GCUUUuuGCuGCG-GCGGUGCGGCAga -5'
30142 3' -54.3 NC_006273.1 + 48177 0.66 0.987913
Target:  5'- -cGAAGGCGACGCaGCC-CGCCa--- -3'
miRNA:   3'- gcUUUUUGCUGCGgCGGuGCGGcaga -5'
30142 3' -54.3 NC_006273.1 + 197960 0.66 0.987913
Target:  5'- aCGAAGAuccuaccuacgACGAauUGCCGUCGCGCCc--- -3'
miRNA:   3'- -GCUUUU-----------UGCU--GCGGCGGUGCGGcaga -5'
30142 3' -54.3 NC_006273.1 + 194511 0.66 0.987913
Target:  5'- cCGAAAacAACGcCGUCGCCGCcCCGa-- -3'
miRNA:   3'- -GCUUU--UUGCuGCGGCGGUGcGGCaga -5'
30142 3' -54.3 NC_006273.1 + 147939 0.66 0.987913
Target:  5'- cCGAuGAGCGucgGCGCgGCCuagagcagcguaGCGCCGUg- -3'
miRNA:   3'- -GCUuUUUGC---UGCGgCGG------------UGCGGCAga -5'
30142 3' -54.3 NC_006273.1 + 215412 0.66 0.987913
Target:  5'- gGAAGccUGACGCCgugacaGCCACGCUGg-- -3'
miRNA:   3'- gCUUUuuGCUGCGG------CGGUGCGGCaga -5'
30142 3' -54.3 NC_006273.1 + 189424 0.66 0.987913
Target:  5'- uCGuGAAGCGGCGCCGgguCGCUGUg- -3'
miRNA:   3'- -GCuUUUUGCUGCGGCgguGCGGCAga -5'
30142 3' -54.3 NC_006273.1 + 56702 0.66 0.987913
Target:  5'- --cGGAACcacCGCCGCCAcCGCgGUCg -3'
miRNA:   3'- gcuUUUUGcu-GCGGCGGU-GCGgCAGa -5'
30142 3' -54.3 NC_006273.1 + 151359 0.66 0.987913
Target:  5'- ------uUGGCGCCGgCGCGCCuUCUc -3'
miRNA:   3'- gcuuuuuGCUGCGGCgGUGCGGcAGA- -5'
30142 3' -54.3 NC_006273.1 + 68717 0.66 0.987913
Target:  5'- uCGAuc-GCGGCGCC-CCACuuGCCG-CUg -3'
miRNA:   3'- -GCUuuuUGCUGCGGcGGUG--CGGCaGA- -5'
30142 3' -54.3 NC_006273.1 + 140232 0.66 0.987913
Target:  5'- aCGugcuGGAGCGuuuCGCgGCCGCggcugagccuuuGCCGUCg -3'
miRNA:   3'- -GCu---UUUUGCu--GCGgCGGUG------------CGGCAGa -5'
30142 3' -54.3 NC_006273.1 + 50314 0.66 0.987768
Target:  5'- cCGAGAacuaugaGACcACGUCGCCGgCGCCGg-- -3'
miRNA:   3'- -GCUUU-------UUGcUGCGGCGGU-GCGGCaga -5'
30142 3' -54.3 NC_006273.1 + 112404 0.66 0.986399
Target:  5'- aCGAAGGAcCGuCGCCGCgGaCGCUG-CUa -3'
miRNA:   3'- -GCUUUUU-GCuGCGGCGgU-GCGGCaGA- -5'
30142 3' -54.3 NC_006273.1 + 104564 0.66 0.986399
Target:  5'- gCGAAcaGAACGAgCGUcauCGUCGCGCCGg-- -3'
miRNA:   3'- -GCUU--UUUGCU-GCG---GCGGUGCGGCaga -5'
30142 3' -54.3 NC_006273.1 + 37206 0.66 0.986399
Target:  5'- gCGuuu-GCGACGCgGCCgACGCgCGUg- -3'
miRNA:   3'- -GCuuuuUGCUGCGgCGG-UGCG-GCAga -5'
30142 3' -54.3 NC_006273.1 + 138029 0.66 0.986399
Target:  5'- aCGcuAGGCGGCGCCggcGCCugGuuG-CUg -3'
miRNA:   3'- -GCuuUUUGCUGCGG---CGGugCggCaGA- -5'
30142 3' -54.3 NC_006273.1 + 84837 0.66 0.986399
Target:  5'- uGAAGGcacccgaGACgGCCGCgGCGgCCGUCa -3'
miRNA:   3'- gCUUUUug-----CUG-CGGCGgUGC-GGCAGa -5'
30142 3' -54.3 NC_006273.1 + 204562 0.66 0.986399
Target:  5'- aGAuacGAGACGACGaggaCGCagACGaCCGUCg -3'
miRNA:   3'- gCU---UUUUGCUGCg---GCGg-UGC-GGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.