miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30142 5' -53.1 NC_006273.1 + 185413 0.66 0.995054
Target:  5'- gCGGC-CGACGUGgUGGAccaGCaccgCGCa -3'
miRNA:   3'- -GCUGuGCUGCACgACCU---CGcaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 101552 0.66 0.995054
Target:  5'- aGACagaaGCGcCGUGCgcgacgGGcGCGgcgUUCGCg -3'
miRNA:   3'- gCUG----UGCuGCACGa-----CCuCGCa--AAGCG- -5'
30142 5' -53.1 NC_006273.1 + 138164 0.66 0.995054
Target:  5'- gCGGcCACGGCcUGCgGGcaGGCGggUUGCa -3'
miRNA:   3'- -GCU-GUGCUGcACGaCC--UCGCaaAGCG- -5'
30142 5' -53.1 NC_006273.1 + 192899 0.66 0.994296
Target:  5'- cCGACACG-C-UGCUGGAGC----UGCu -3'
miRNA:   3'- -GCUGUGCuGcACGACCUCGcaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 150278 0.66 0.994296
Target:  5'- gGAUGC-ACGUGCgGGAGCucGUgcucuccgUCGCa -3'
miRNA:   3'- gCUGUGcUGCACGaCCUCG--CAa-------AGCG- -5'
30142 5' -53.1 NC_006273.1 + 145068 0.66 0.994296
Target:  5'- uCGGCcuagccgcggGCGACGccGCUGGcGGCGg--CGCu -3'
miRNA:   3'- -GCUG----------UGCUGCa-CGACC-UCGCaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 112222 0.66 0.993967
Target:  5'- gGACGCGGCGguggcaaugcgcgGCgGGGGCugg-CGCg -3'
miRNA:   3'- gCUGUGCUGCa------------CGaCCUCGcaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 123804 0.66 0.993535
Target:  5'- ---uGCGACGUcGCgGGGGCGguuugagacucgccgUUCGCu -3'
miRNA:   3'- gcugUGCUGCA-CGaCCUCGCa--------------AAGCG- -5'
30142 5' -53.1 NC_006273.1 + 73419 0.66 0.993446
Target:  5'- gCGGuCGCGAUG-GCccGGAGCGcgcUCGCc -3'
miRNA:   3'- -GCU-GUGCUGCaCGa-CCUCGCaa-AGCG- -5'
30142 5' -53.1 NC_006273.1 + 159669 0.66 0.993446
Target:  5'- gGACAUGaugauaGCGUGCU-GAGCGc--CGCa -3'
miRNA:   3'- gCUGUGC------UGCACGAcCUCGCaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 82604 0.66 0.993446
Target:  5'- gCGuGCAaacgGGCGUGCUGGGcGCGcucCGCg -3'
miRNA:   3'- -GC-UGUg---CUGCACGACCU-CGCaaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 134936 0.66 0.993446
Target:  5'- --cCAgGACG-GCUGGGGCGaccaUUGCa -3'
miRNA:   3'- gcuGUgCUGCaCGACCUCGCaa--AGCG- -5'
30142 5' -53.1 NC_006273.1 + 177539 0.66 0.993172
Target:  5'- uGGCuCGGCGcgGCUGuauuauuagacgccGGGCGUcUUCGCa -3'
miRNA:   3'- gCUGuGCUGCa-CGAC--------------CUCGCA-AAGCG- -5'
30142 5' -53.1 NC_006273.1 + 157680 0.66 0.993079
Target:  5'- uGAUACGACGUGgUcgcgcacgauguuGAGCGUgaCGCu -3'
miRNA:   3'- gCUGUGCUGCACgAc------------CUCGCAaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 31679 0.66 0.992498
Target:  5'- ---gACGGCGUGUUGGAcgcuGUGUggCGUg -3'
miRNA:   3'- gcugUGCUGCACGACCU----CGCAaaGCG- -5'
30142 5' -53.1 NC_006273.1 + 945 0.66 0.992498
Target:  5'- gCGACgGCGuuguuuucggGCGUGCUGG-GCGccggCGCc -3'
miRNA:   3'- -GCUG-UGC----------UGCACGACCuCGCaaa-GCG- -5'
30142 5' -53.1 NC_006273.1 + 144285 0.66 0.992498
Target:  5'- cCGAgGCGgaucGCGUGCcuaccgaucUGGcGGCGUUgugCGCg -3'
miRNA:   3'- -GCUgUGC----UGCACG---------ACC-UCGCAAa--GCG- -5'
30142 5' -53.1 NC_006273.1 + 165074 0.66 0.992498
Target:  5'- -cGCACGGCGcgGUUGGuacGCGUggcUUCGUu -3'
miRNA:   3'- gcUGUGCUGCa-CGACCu--CGCA---AAGCG- -5'
30142 5' -53.1 NC_006273.1 + 115382 0.66 0.992498
Target:  5'- gGACGCGACGgugacgGCauuauGAGCGgcggCGCu -3'
miRNA:   3'- gCUGUGCUGCa-----CGac---CUCGCaaa-GCG- -5'
30142 5' -53.1 NC_006273.1 + 116787 0.66 0.992498
Target:  5'- cCGGCgcugcgACGACGUGgaGGccGCGacgUCGCu -3'
miRNA:   3'- -GCUG------UGCUGCACgaCCu-CGCaa-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.