miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30143 3' -58.4 NC_006273.1 + 64773 0.66 0.889869
Target:  5'- cGCGaaGGCC-UACGCCg--UGGGGCAg -3'
miRNA:   3'- aCGCa-CCGGcGUGUGGacaACCUCGU- -5'
30143 3' -58.4 NC_006273.1 + 184469 0.66 0.889869
Target:  5'- gGUGUGGCUGCGaacgguagcaguCGCCgg--GGAGCc -3'
miRNA:   3'- aCGCACCGGCGU------------GUGGacaaCCUCGu -5'
30143 3' -58.4 NC_006273.1 + 190353 0.66 0.88322
Target:  5'- gUGCGagcaGGCCGC-CGCC-GUgGGGGCc -3'
miRNA:   3'- -ACGCa---CCGGCGuGUGGaCAaCCUCGu -5'
30143 3' -58.4 NC_006273.1 + 36767 0.66 0.88322
Target:  5'- cGgGUGGCCugaGCACGCCgagGcccagUGGcGGCAg -3'
miRNA:   3'- aCgCACCGG---CGUGUGGa--Ca----ACC-UCGU- -5'
30143 3' -58.4 NC_006273.1 + 201088 0.66 0.88322
Target:  5'- cUGCGccUGGaCgGCACccuguGCCUGUuucUGGAGCc -3'
miRNA:   3'- -ACGC--ACC-GgCGUG-----UGGACA---ACCUCGu -5'
30143 3' -58.4 NC_006273.1 + 186540 0.66 0.876362
Target:  5'- cGCcccUGGCUaCGCACCUGUggccgcaGGAGCu -3'
miRNA:   3'- aCGc--ACCGGcGUGUGGACAa------CCUCGu -5'
30143 3' -58.4 NC_006273.1 + 167346 0.66 0.876362
Target:  5'- gGCGcUGGCCGagccCACACCUGccGGcAGUc -3'
miRNA:   3'- aCGC-ACCGGC----GUGUGGACaaCC-UCGu -5'
30143 3' -58.4 NC_006273.1 + 135512 0.66 0.8693
Target:  5'- --gGUGGCgCGUAgcCACCUGUUGGAa-- -3'
miRNA:   3'- acgCACCG-GCGU--GUGGACAACCUcgu -5'
30143 3' -58.4 NC_006273.1 + 218502 0.66 0.8693
Target:  5'- aGCcUGGCCGCGCGCCgcagaccgUGUUcGuAGCGg -3'
miRNA:   3'- aCGcACCGGCGUGUGG--------ACAAcC-UCGU- -5'
30143 3' -58.4 NC_006273.1 + 153795 0.66 0.866419
Target:  5'- cGCGgccgcGGCCGC-CGCCUGcgaggaccucucGGAGCu -3'
miRNA:   3'- aCGCa----CCGGCGuGUGGACaa----------CCUCGu -5'
30143 3' -58.4 NC_006273.1 + 16642 0.66 0.854581
Target:  5'- cUGCGUuGCCGCuggUACCUGcUGG-GCGc -3'
miRNA:   3'- -ACGCAcCGGCGu--GUGGACaACCuCGU- -5'
30143 3' -58.4 NC_006273.1 + 162924 0.66 0.854581
Target:  5'- gGaCGUGGCCGCcgGCACCgac-GGuGCGu -3'
miRNA:   3'- aC-GCACCGGCG--UGUGGacaaCCuCGU- -5'
30143 3' -58.4 NC_006273.1 + 71847 0.67 0.846936
Target:  5'- cGCG-GGaCCGCACGCCgcGUaccaccacagUGGAGUc -3'
miRNA:   3'- aCGCaCC-GGCGUGUGGa-CA----------ACCUCGu -5'
30143 3' -58.4 NC_006273.1 + 129812 0.67 0.846936
Target:  5'- -cCGUGGCCGUAC-CCUGUUuuuGCGa -3'
miRNA:   3'- acGCACCGGCGUGuGGACAAccuCGU- -5'
30143 3' -58.4 NC_006273.1 + 177127 0.67 0.839109
Target:  5'- cGaCGaGGUgGCGCAUCUG-UGGGGCGu -3'
miRNA:   3'- aC-GCaCCGgCGUGUGGACaACCUCGU- -5'
30143 3' -58.4 NC_006273.1 + 192889 0.67 0.831104
Target:  5'- gGCGacucGGCCG-ACACgCUGcUGGAGCu -3'
miRNA:   3'- aCGCa---CCGGCgUGUG-GACaACCUCGu -5'
30143 3' -58.4 NC_006273.1 + 117214 0.67 0.814594
Target:  5'- cGCaGUcaGGCCGcCACGCCggcgGcUGGGGCGc -3'
miRNA:   3'- aCG-CA--CCGGC-GUGUGGa---CaACCUCGU- -5'
30143 3' -58.4 NC_006273.1 + 133312 0.67 0.806103
Target:  5'- cGUGUGGCCGC-CGCUgcuc-GAGCAc -3'
miRNA:   3'- aCGCACCGGCGuGUGGacaacCUCGU- -5'
30143 3' -58.4 NC_006273.1 + 177266 0.68 0.797464
Target:  5'- cGCGUGcCCGUggugaauuACGCgUgGUUGGAGCAg -3'
miRNA:   3'- aCGCACcGGCG--------UGUGgA-CAACCUCGU- -5'
30143 3' -58.4 NC_006273.1 + 204103 0.68 0.783353
Target:  5'- aGCGcGGCCGCACGCCccgaacggcucugguUGUUGaccuGCGc -3'
miRNA:   3'- aCGCaCCGGCGUGUGG---------------ACAACcu--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.