miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30143 5' -53.9 NC_006273.1 + 68358 0.66 0.987083
Target:  5'- cCGUGCAGC------UGCAAaucaGCGCCUc -3'
miRNA:   3'- -GCACGUCGuucucaACGUUg---CGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 154485 0.66 0.987083
Target:  5'- --aGCGGCGAGGGUgGUuuucccUGCGCCg -3'
miRNA:   3'- gcaCGUCGUUCUCAaCGuu----GCGCGGg -5'
30143 5' -53.9 NC_006273.1 + 226499 0.66 0.987083
Target:  5'- cCGUGaCGGU--GGGUUuCGuCGCGCCCa -3'
miRNA:   3'- -GCAC-GUCGuuCUCAAcGUuGCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 164444 0.66 0.987083
Target:  5'- --aGCAGCAGcacgccGCGuCGCGCCCa -3'
miRNA:   3'- gcaCGUCGUUcucaa-CGUuGCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 140856 0.66 0.987083
Target:  5'- gGUGC-GCGGccgcuucucGGGgcGCGAgGUGCCCg -3'
miRNA:   3'- gCACGuCGUU---------CUCaaCGUUgCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 133480 0.66 0.987083
Target:  5'- gCGUGCAgGCGcGGAcgcugGCGGCG-GCCCg -3'
miRNA:   3'- -GCACGU-CGU-UCUcaa--CGUUGCgCGGG- -5'
30143 5' -53.9 NC_006273.1 + 190106 0.66 0.987083
Target:  5'- gGUGCAGaaaacgaaGAGGuugcuGUUGCGGCGCGagcagCCg -3'
miRNA:   3'- gCACGUCg-------UUCU-----CAACGUUGCGCg----GG- -5'
30143 5' -53.9 NC_006273.1 + 233553 0.66 0.987083
Target:  5'- aGU-CAGCGAGGccGUcGCGuugGCGCGCCa -3'
miRNA:   3'- gCAcGUCGUUCU--CAaCGU---UGCGCGGg -5'
30143 5' -53.9 NC_006273.1 + 149423 0.66 0.987083
Target:  5'- cCGcUGCccgauGGCAcGGGggGCGACG-GCCCc -3'
miRNA:   3'- -GC-ACG-----UCGUuCUCaaCGUUGCgCGGG- -5'
30143 5' -53.9 NC_006273.1 + 212046 0.66 0.986928
Target:  5'- --cGC-GCGAGGGUcGCGgggguggGgGCGCCCa -3'
miRNA:   3'- gcaCGuCGUUCUCAaCGU-------UgCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 129216 0.66 0.985463
Target:  5'- --cGCGGCcuacg-UGC-ACGCGCCCg -3'
miRNA:   3'- gcaCGUCGuucucaACGuUGCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 116861 0.66 0.985463
Target:  5'- uGUGCAGCGuGGGUcgGCGuCGCGgUa -3'
miRNA:   3'- gCACGUCGUuCUCAa-CGUuGCGCgGg -5'
30143 5' -53.9 NC_006273.1 + 130400 0.66 0.985463
Target:  5'- gCGUGCuGGCuc-AGcUGCAucgcgacCGCGCCCg -3'
miRNA:   3'- -GCACG-UCGuucUCaACGUu------GCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 139198 0.66 0.985463
Target:  5'- --cGCGGU-AGAGcucgGuCAACGCGUCCa -3'
miRNA:   3'- gcaCGUCGuUCUCaa--C-GUUGCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 197935 0.66 0.985293
Target:  5'- gGUGCccgagacggggGGCAgauGGcuauaaaaacccaAGUaGCGGCGCGCCCc -3'
miRNA:   3'- gCACG-----------UCGU---UC-------------UCAaCGUUGCGCGGG- -5'
30143 5' -53.9 NC_006273.1 + 175039 0.66 0.985293
Target:  5'- uGUGUAGCGGguuuuacGAGUggugGCGGCGuCGUCa -3'
miRNA:   3'- gCACGUCGUU-------CUCAa---CGUUGC-GCGGg -5'
30143 5' -53.9 NC_006273.1 + 176700 0.66 0.984949
Target:  5'- gCGUGCugcGCGAGuuggugaccgaggcGGUgguuugggGCAACGCGCgCu -3'
miRNA:   3'- -GCACGu--CGUUC--------------UCAa-------CGUUGCGCGgG- -5'
30143 5' -53.9 NC_006273.1 + 194859 0.66 0.984949
Target:  5'- --aGCGGC-GGAGcgcUUGCGGCGCcauaaaggcgcuuaGCCCu -3'
miRNA:   3'- gcaCGUCGuUCUC---AACGUUGCG--------------CGGG- -5'
30143 5' -53.9 NC_006273.1 + 234797 0.66 0.984949
Target:  5'- --aGCGGC-GGAGcgcUUGCGGCGCcauaaaggcgcuuaGCCCu -3'
miRNA:   3'- gcaCGUCGuUCUC---AACGUUGCG--------------CGGG- -5'
30143 5' -53.9 NC_006273.1 + 208867 0.66 0.98442
Target:  5'- aGUGCAaacaccaggccguuGCuGGGGUgucUGUggucggugagcuccAGCGCGCCCa -3'
miRNA:   3'- gCACGU--------------CGuUCUCA---ACG--------------UUGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.