Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 154972 | 0.66 | 0.925836 |
|
Target: 5'- aGCUGC-CCGACGUgaGUUcGCUCu-- -3' miRNA: 3'- -UGACGaGGCUGCGgaCAGaCGAGuaa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 124171 | 0.66 | 0.920414 |
|
Target: 5'- uGCUGCcaacgccaccgCCGcCGCCUcGUCUgGCUCGUg -3' miRNA: 3'- -UGACGa----------GGCuGCGGA-CAGA-CGAGUAa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 144570 | 0.66 | 0.920414 |
|
Target: 5'- -gUGCg-CGACgGCCUcgGUCUGCUCAUc -3' miRNA: 3'- ugACGagGCUG-CGGA--CAGACGAGUAa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 138035 | 0.68 | 0.84593 |
|
Target: 5'- gGCgGCgCCGGCGCCUGguugCUGCcgCGUc -3' miRNA: 3'- -UGaCGaGGCUGCGGACa---GACGa-GUAa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 105904 | 0.68 | 0.829713 |
|
Target: 5'- --aGCUCCGACGCCUcgc-GCUCAc- -3' miRNA: 3'- ugaCGAGGCUGCGGAcagaCGAGUaa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 112913 | 0.69 | 0.795236 |
|
Target: 5'- uACU-CUCCGAuuuggaagccgcCGCCUGUCUGCUa--- -3' miRNA: 3'- -UGAcGAGGCU------------GCGGACAGACGAguaa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 41446 | 0.73 | 0.593463 |
|
Target: 5'- -gUGCUCCGACGUCccgcauccaacgucGUCUGCUCAc- -3' miRNA: 3'- ugACGAGGCUGCGGa-------------CAGACGAGUaa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 46491 | 0.73 | 0.589441 |
|
Target: 5'- --aGCaCCGGCGCCUG-CUGCUCGa- -3' miRNA: 3'- ugaCGaGGCUGCGGACaGACGAGUaa -5' |
|||||||
| 30144 | 3' | -56.4 | NC_006273.1 | + | 143458 | 1.04 | 0.006829 |
|
Target: 5'- cACUGCUCCGACGCCUGUCUGCUCAUUc -3' miRNA: 3'- -UGACGAGGCUGCGGACAGACGAGUAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home